Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2155 ATGGCTGTTGCTGGTCTGCATAATGTGACTGTGCTTGAAACTACTTTCCTAAGGGAATCCCATTCTCAATCATCTGGGAGGCAAGAAGATGGAGGGAGAGGAAGCACCCGATCGTCTTCGCTCTTGCAAATGTGGCGAGAGATTGAAGATGAGCAGGTAGTGAGACAAGTTCAAGGAAGACCTGGGGAAGTATTACTTCAACAAAGGGGTGATGGGTCGGTTGCAGACCTCGCACAGGAAAATATGGCAGATAGCCCTCAGAGAGAAGGACATATGATAGAAGATGCAGTTTTGGGTGAGAATGATTCTGAAACGTGGTCACAAAGTCAGAATGAGTTCAATGATGAACAGGAGGAATTAAACAATTCTAGCCGTGAAAACTCCTCCGATTTTGGGGAAGTTGAGAGGGAAAGAGTCAGACAAATTTTTAGGGAATGGATGAATAATGGTTCGACGGATCATGCATCAAATGTTTCCCGAGAAAATAACGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGTATCATAAGGGAGTGGGTTCAGATGAGTAGCCAGCAGAGAGGTGTGTCTTTTGGCGAAAATAGAGAAGAACAATCTTCTGAAAGTGGTGCCCAAATTGAATGTGTTCGTGATGGATTTGTCGTTAATCAGAATGAGGGTCAAACTGAGCATACACGGAGGGGAATCCGTAAATTACGTGGCCGACAGGTGCTGCTTGACATGCTTAAGAAGGCTGAGATGGAAAGGCATAGAGAAGTTCAAGAGTTGTTGGACCATCGAGCCGTATCTCATTTCCCCCACCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGGTTGGTAACAACAGGTCAGCTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAGCAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTTTAAAAAAGACAATTTGGGTTGCAGTCAAGCAACCAGCAATCTATCTGATACCTCATCTGACGGTGATATTGATCTTAATTCAATGGAACAAACTGGAGCTAGCAGTTCACAAGCTGTTCCAACTGTACATTCTGAACAATCTGAACCGAATAACACGGGAAATGACAGACTTGGGATAACAGGTGAACAAATTTATTCACAGGGAACCACTTTCGAGAATTTAGATTGGCAAGGCTCTACTGTTTATGTAGAAACTAGAGATTGGGAATCATCTTCTAGTATCAGAGGTGAAAGAAGAGATGGCACTGGACAAAATGTTGATATAATGCCAACAGAAGATACTCCTAATGACCATACCCAACAAAGCTTGCAAATTGAAGATATGGAGCATGGCAATATGCAAGAACTATGTGAGGTACATACTGAGCAATCTCAGCAGGGTGATGATAGGAGCAATTTATCAAATCACAATGATCGTGTATATGGAAATATTGTTGATGATGTAGATTCAATTGAATCTGTTCCTCTGGAAGGAGAGCAACAGGAAGAAGTTGTTAATGAAAATAACGGAAGAGATTGGCATCAAACTAACGTTGAATGGAGAAATAGCACCCAGCAAAGTGTGGATGATAATCAGCTCAGTAGTGCGTCTAATGAATGGCCCCAAAACATCTTGGGAAGTGAAGATGGAGAAATTTCTCGTATGCAAGAGCAGGAAGTCCCTGAAGTGTGGCAAGAGGATGGTAGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAACGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCAGCAGATGACAATGTATACAGTGTTGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCAGGCTCACGTTGAATGGGGGCTGCAGGAAACAAACCCTTCTACTCCCTTGGGGGAACCAAACTTGGGGCAACAGAGTAGGGATCCAATTGTTGGTCCCGAGGGTACTGTTACTAGTTCACTTGACCTACCCCTGCCACCAACCCCTCCTCCTCAGCCTTTATGGGATCGGCACTCACGTCATGAAAATTGGTCACAGAACGACATAAATAATCAGCGCCTAGGAATTGAGTGGGATGTTGTTAATGACTTGAGGATTGACATGGTGAGGCTACAGCAAAGGATGAATAATATGCAGAGAACATTGGAGGCCTGCATGGATATGCAACTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTAAATCGCTCAACTGGTTCATCAGATGACCATGTTTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGGCTTTGTTGTATATGCTACGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCGGTGGTGGAAGTGATACGTGCCTATTCTATACAATAA 2541 0.4337 MAVAGLHNVTVLETTFLRESHSQSSGRQEDGGRGSTRSSSLLQMWREIEDEQVVRQVQGRPGEVLLQQRGDGSVADLAQENMADSPQREGHMIEDAVLGENDSETWSQSQNEFNDEQEELNNSSRENSSDFGEVERERVRQIFREWMNNGSTDHASNVSRENNGSRGEWLGETEQERVSIIREWVQMSSQQRGVSFGENREEQSSESGAQIECVRDGFVVNQNEGQTEHTRRGIRKLRGRQVLLDMLKKAEMERHREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSVGNNRSASIAESELGLLRQKQTVSGLREGFFFKKDNLGCSQATSNLSDTSSDGDIDLNSMEQTGASSSQAVPTVHSEQSEPNNTGNDRLGITGEQIYSQGTTFENLDWQGSTVYVETRDWESSSSIRGERRDGTGQNVDIMPTEDTPNDHTQQSLQIEDMEHGNMQELCEVHTEQSQQGDDRSNLSNHNDRVYGNIVDDVDSIESVPLEGEQQEEVVNENNGRDWHQTNVEWRNSTQQSVDDNQLSSASNEWPQNILGSEDGEISRMQEQEVPEVWQEDGSFQEAVEIWLGGPSDNEVAPVGRIHGFYFPADDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGQAHVEWGLQETNPSTPLGEPNLGQQSRDPIVGPEGTVTSSLDLPLPPTPPPQPLWDRHSRHENWSQNDINNQRLGIEWDVVNDLRIDMVRLQQRMNNMQRTLEACMDMQLELQRSIRQEVSAALNRSTGSSDDHVSPDDKSKWECVRKGLCCICYESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCQAPVVEVIRAYSIQ* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2155 846 Coils Coil 724 751 - -
Apr2g2155 846 MobiDBLite consensus disorder prediction 463 482 - -
Apr2g2155 846 MobiDBLite consensus disorder prediction 414 440 - -
Apr2g2155 846 MobiDBLite consensus disorder prediction 331 378 - -
Apr2g2155 846 SUPERFAMILY RING/U-box 793 839 - -
Apr2g2155 846 ProSiteProfiles Zinc finger RING-type profile. 794 833 IPR001841 -
Apr2g2155 846 MobiDBLite consensus disorder prediction 17 40 - -
Apr2g2155 846 PANTHER PROTEIN, PUTATIVE-RELATED 1 846 - -
Apr2g2155 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 770 844 IPR013083 -
Apr2g2155 846 MobiDBLite consensus disorder prediction 524 545 - -
Apr2g2155 846 MobiDBLite consensus disorder prediction 463 481 - -
Apr2g2155 846 CDD mRING-HC-C3HC5_NEU1 794 832 - -
Apr2g2155 846 MobiDBLite consensus disorder prediction 118 134 - -
Apr2g2155 846 Pfam Zinc finger, C3HC4 type (RING finger) 791 838 - -
Apr2g2155 846 MobiDBLite consensus disorder prediction 101 134 - -
Apr2g2155 846 MobiDBLite consensus disorder prediction 652 689 - -
Apr2g2155 846 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 846 - -
Apr2g2155 846 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2155 Apr-Chr2 26685960 26691278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2155 794 840 C3H Transcription Factor Family AT3G06140 38.298 4.31e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2155 - - gmx:100804887 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2155 2 26685960 26691278 Apr2g2155 2 26685960 26691278 ECH
Apr2g2155 2 26685960 26691278 Apr3g1303 3 27511018 27516392 ECH
Apr2g2155 2 26685960 26691278 Apr3g1303 3 27511018 27516392 PCT