Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2138 ATGGAACCTCCCGTTGTGAGATCCAGGGGTCGCCCGCGGAAACGGAGAAGAGAGGAGGACCTAACCGTCACCGTTGACCCCAAAACCGTTCTCGAATCGAAGAAGAGAGCACCGATAGCATTGGTTGGACGATACGTGCTGAAAGAGTTCCCCCGAGACACTGTTCTTCTCGGCAAAGTCGTGCGTTACGATAGTGGATTATACAGAGTCACGTACGAAAGTGGCGGTTTCGAGGATTTAGATAGCGCTGAGATTCGTAGGATACTTCTCGATGAAAGTTACTTCGACGACGATTTGACTCGAAGGAAGAGTGAATTGGAGGAATTATTAGCGTTGCCGACGATCGTAGAGGTACCGAAGAAGGATTCGAGTGAATTGCACGGTGATTTATCGATTGCAAACGAAGAGGAACGAGACGAAACAACGGATGTTGATTCGTCCGGTGACTCTAGGGATTTGAGCTCCGACGCCGAAACGATATTACCTATACCGTTACCGTTGTCGTTGCCGCCGTCTTCGGGAACTATTAATGTGCCGGAACCTTACGTTTCGTACCTCTTTTCAGTTTATGGATTCCTACGATCGTTCAGCATTCGCTTGTTCTTGAGTCCGTTTACTCTGGACGAGTTTGTTGGTGCTGTTAATTGTCGAGTTTCGAACACGTTACTTGATGCCGTTCATGTTTCCCTGATGCGTGTATTGAGACGTCACCTTGAAAGCCTTTCAGCAGAAGGTTCCCCGCGTGCATCAAAATGCCTGAGGTGCAGTGATTGGAGCTTGCTTGATTCATTGACTTGGCCCGTTTTTGTGATTCAGTATTTAGCAATTTACGGATACACAAAGGGACCTGAGTGGAAAGGATTTAATGATGAGATTCTTTATGGCGAGTATTATTTGTTGTCTGCTAGTAGGAAGTTAATGATATTGCAAATTCTCTGTGATGATGTTTTGGAGTCTGAGGAACTAAAAGCTGAAATGAACATGCGTGAGGAATCAGAGGTTGGGATGGATTTTGATGATGAAGATATCCTTTCTGCTGACAATGGGCCTAGAAGAGTCCATCCAAGATATGCCAAAACTACCGCCTGCAAGGATAGTGAAACTATGAAGTTTGTTTCAGAATTGAATGCTGTGAATCACTCTATTTCACATATCAGAGATACTGAAACTGCCGAGGATGGTGATATTGATGGAAATGGAGATGAATGTCGCCTATGTGGCATGGATGGGACCTTGCTTTGCTGTGATGGTTGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGTATATACCAGAAGGGACATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCAACAATTGCACGGGGAACATCACTTAAGGGGGGCGTGATATTTGGAAAGGATTTGTATGGGCAAGTTTTCATGGGTACTTGCGACCACTTACTGGTGCTCAATGTTGAAAGTGATGAATTTTGTCTTAAATACTACAATCAGAATGACATTCCTGAAGTTATCCAACTGCTTTATGCATCTGTGCAACATAGACCTATATACAGTGGTATTTGCATGGCAGCGTTACAATATTGGAATATTCCAGAAAGCTTCTTACCCCTTTGTGTTATATCTGTACCACAAGTAAACTCAGCAAATACAAAGACGGATTTGAACTCCTCTACTGTTCCTCCTATGGTTGAAGACCACAAAGCTGTTAGTTCAGTGAAGGCAGAATATAATTTAACGTTTGTGAATGGGATTTCTAGTGATAATATGGTGCCATCTCTTGATGCTTCACTGGTTACCACTCAAAGTTCTGCTCAAGGAAGCAGTGGCAATGATAGAACTGAGGAGTTACCTACCGTAAATTTGAAGTCTCATGAGGAAGCTGCAATGGATTCAGTTGTTTCTACTGTTAACAATCAGTCAGACACAAAGTACCAAAACTCTGTTAATAGGTTGATTGTAGGTCCTGCCCAGTGCTCCTCGGTAAGCAGTCAATTTAATAATTATGGGCATACAAATGACATGGGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGATCAAGCTGGTTTTGGAAAATGCAAAGGCAGTTTAACTAATGATTTTGTGTACACGGGTTGCTCCAATAAACCACAGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCTTCCGCTGCGGCTAATTTGGCCGTTCTTTCTTCGGAGGATTCTATATCTGAGGGTCATGTGTCTGACAACTTAAGGAAAGCAACATCTGAAAACACTTCTTTGCTAGCAAAAGCATTCTCACTAACTGCTTCACGCTTCTTTTGGCCCAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTAAGTGCAACCAAAAGTGCCGTGAAAGTCCTTTCTGGCCTTGCTCCTGTTAGGAATGGAGAGGGAATCATCCCTAGCATTGCAACATATGTTATTTATATTGAGGAAAGTTTACGTGGTTTAATAGTTGGGCCCTTTCTATGTGAAAACTTTAGAAAGCAATGGCGTAAACAATTGGAATGGGCCAGATCATTTGGTGATATAAAGCCTCTTTTACTCAAACTTGAGGAGAACATTCGTACAATTGCTTATTGTGGGGACTGGGTAAAGTTGATGGATGATTGGTTGGTTGAATTTTCTACAAAGCAAAGTACAGCATGTACTCTTGGAACATCACAGAAACGTGCAACACGTGGGAGGTGTAAGAAACAGTTATCTACTGATAAAGTTAAAGCAGATGGTTGCCATGAAAACTTTGCATGGTGGCATGGCAGCAAATTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGTCAGAAAAGCAGCTCGCAAAGGTGGTTTGAGGAAAATTTTTGGTATATTCTATGCGGATGGCTCTGAAACTCCTAAAAGAAGCAGACAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGCAGAAATGCATCAGAGCTGGCACTTCAGGTCCGATATTTAGATTTTCATATCAGATGGAGTGATCTGGTGCGTCCTGAGCATAACCTTCAGGATGGGAAAGGTCAAGATACTGAAACTTCTGCTTTTAGAAATGCAAATATTTGTGAAAAGAAGCTTGTAGAGGGCAAAATTTTTTACAGAATAGCCTTTGGGAGCCAAAAGCATCTTCCTTCGCGGGTAATGAAAAATGTTGAAATAGAGCAAGGTCCTGAAGGAAAGGAGAAGTATTGGTTCTCCGATATACGTGTTCCTTTATATTTGGTGAAGGAGTATGAAGAAGGCAAAGGAAAATTGCTATCTGATAAAGAGTACTTGAATATTGCATCTCAGTTGCACAAAAGGCGGTTGAAAGCTACCTGCAAGGATATATTTTTTTACCTTACCTGCAAGAGAGACAAATTGGACATGTTGTCATGTTCTGTATGTCAGCTGGGTGTTTTAATTGGGAATGCGCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACCAAGGCTGTTCCATAAGTTCGACAGTCTCTACATATGAAGAAGTTCAGTTCCTGGCCACATGCAAACATTGTTATCACACTAAATTACTTACTCAAAAAGAAACCTGTAATGAGTCTCCAACTAGTCCCTTACTCTTAAAAGGCCATGAACATACCTCTTTGACATCTCTGAAAGAGCCAAGGCCTAAATGTTGTGATCGAGGATTGAGGTCTACTAGGACAAAGAATAGCTGTCCTGACATGAAGCAAGTTGCTTCTGATTCACCTTTGGAAGTGAAAAGTCGTTCTAGAAGCAGTTCTTGGGGTATTATATGGAAAAAGAAGAATATTGAAGATACAGGCTTTGATTTCAGGCTCAAGAATATACTTCTAAAGGGACGTTCAGGCCTGCCTCAAATGAAGCCTGTATGTTGCTTGTGTCATAAACCATATATGTCTGATCTAATGTACATTTGCTGTGAAACATGCAAAAAATGGTATCATGCCGAAGCTCTTGAGCTTGAAGAGTCCAAAATTTTTTATATTCTGGGCTTCAAATGTTGCAAATGTCGGAGGATAAAGTCACCTGTGTGTCCTTACTCTGATTTGTTGTACAAGAAGCAAGAGGGCAAGAAGTCACACTCAAGGGTTTCAAAGAAAGAGCACTGTGGAGCAGATTCTGATTCTGGAACACTTGTTGATATGAGAGCATGTGAGCCTGCTACTCCTATCTATCCTGCAGAGGATTTCTCTAGACAAGACAATGATCCTCTGCTGTTCTCCCTTTCTAGCGTTGAGCTGATTACAGAACCCAGGTTAGATGCTAATGTTGAGGGTAATACTATCTCTGGGCCAGTGCTTCAGAAATTACCTTTGAGAAGGCTTGTTAAACGTGAGGGGGAAAATAATGATTCTTCTGGAGGTAATCTGGATACTGAATTTTTGACACCCAATGAAATGGCTAATCTGTCTAAATCTGTAACGGATTTATTCCCTTCTGCAGAATATGGTTCTGCAGATAGCAACCTTTCAAATGTCTCCGAAATTGTAGGATGTGATAATGCCGAGTTTGAACCTCATACCTACTTCTCTTTGACTGAGCTGCTGCACTCAGATGAAAGTAGTCAATTTGAGGTAGCTAATGCATCTGGAGACTTGTCAGAATATTTGAAAATTTCTTCTGTATTAGGTGTTCCTGAAGAATGTGGAACTGTTAATATAGCATCCAATGATGGACCTACAATTTCATTGCAAGGAAATGTTAATAATTGTTGGCAATGTTCTCAAAAGGAACCAGCCCCTGATCTCTCTTGTCAGATTTGTGGGATTTGGATTCACAGCCAATGTTCACCTTGGGTTGAATCACCATCTAGGTTTGGAAGTTGGAGGTGCGGTACTTGCCGGGAATGGCGATAG 4956 0.4173 MEPPVVRSRGRPRKRRREEDLTVTVDPKTVLESKKRAPIALVGRYVLKEFPRDTVLLGKVVRYDSGLYRVTYESGGFEDLDSAEIRRILLDESYFDDDLTRRKSELEELLALPTIVEVPKKDSSELHGDLSIANEEERDETTDVDSSGDSRDLSSDAETILPIPLPLSLPPSSGTINVPEPYVSYLFSVYGFLRSFSIRLFLSPFTLDEFVGAVNCRVSNTLLDAVHVSLMRVLRRHLESLSAEGSPRASKCLRCSDWSLLDSLTWPVFVIQYLAIYGYTKGPEWKGFNDEILYGEYYLLSASRKLMILQILCDDVLESEELKAEMNMREESEVGMDFDDEDILSADNGPRRVHPRYAKTTACKDSETMKFVSELNAVNHSISHIRDTETAEDGDIDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYIPEGTWYCPECKINMIGPTIARGTSLKGGVIFGKDLYGQVFMGTCDHLLVLNVESDEFCLKYYNQNDIPEVIQLLYASVQHRPIYSGICMAALQYWNIPESFLPLCVISVPQVNSANTKTDLNSSTVPPMVEDHKAVSSVKAEYNLTFVNGISSDNMVPSLDASLVTTQSSAQGSSGNDRTEELPTVNLKSHEEAAMDSVVSTVNNQSDTKYQNSVNRLIVGPAQCSSVSSQFNNYGHTNDMGLPMNLSLQTKGDQAGFGKCKGSLTNDFVYTGCSNKPQSYINYYMHGDFAASAAANLAVLSSEDSISEGHVSDNLRKATSENTSLLAKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKALVSSKKGCMLNHAALSATKSAVKVLSGLAPVRNGEGIIPSIATYVIYIEESLRGLIVGPFLCENFRKQWRKQLEWARSFGDIKPLLLKLEENIRTIAYCGDWVKLMDDWLVEFSTKQSTACTLGTSQKRATRGRCKKQLSTDKVKADGCHENFAWWHGSKFTKSVFQKAVLPKSMVRKAARKGGLRKIFGIFYADGSETPKRSRQLVWRAAVQMSRNASELALQVRYLDFHIRWSDLVRPEHNLQDGKGQDTETSAFRNANICEKKLVEGKIFYRIAFGSQKHLPSRVMKNVEIEQGPEGKEKYWFSDIRVPLYLVKEYEEGKGKLLSDKEYLNIASQLHKRRLKATCKDIFFYLTCKRDKLDMLSCSVCQLGVLIGNALKCSACQGYCHQGCSISSTVSTYEEVQFLATCKHCYHTKLLTQKETCNESPTSPLLLKGHEHTSLTSLKEPRPKCCDRGLRSTRTKNSCPDMKQVASDSPLEVKSRSRSSSWGIIWKKKNIEDTGFDFRLKNILLKGRSGLPQMKPVCCLCHKPYMSDLMYICCETCKKWYHAEALELEESKIFYILGFKCCKCRRIKSPVCPYSDLLYKKQEGKKSHSRVSKKEHCGADSDSGTLVDMRACEPATPIYPAEDFSRQDNDPLLFSLSSVELITEPRLDANVEGNTISGPVLQKLPLRRLVKREGENNDSSGGNLDTEFLTPNEMANLSKSVTDLFPSAEYGSADSNLSNVSEIVGCDNAEFEPHTYFSLTELLHSDESSQFEVANASGDLSEYLKISSVLGVPEECGTVNIASNDGPTISLQGNVNNCWQCSQKEPAPDLSCQICGIWIHSQCSPWVESPSRFGSWRCGTCREWR* 1652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2138 1651 SMART testlast3 180 240 IPR018501 -
Apr2g2138 1651 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 284 327 IPR028942 -
Apr2g2138 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1313 1384 IPR013083 -
Apr2g2138 1651 ProSitePatterns Zinc finger PHD-type signature. 403 444 IPR019786 -
Apr2g2138 1651 Pfam PHD-finger 403 445 IPR019787 -
Apr2g2138 1651 ProSiteProfiles DDT domain profile. 180 240 IPR018501 -
Apr2g2138 1651 SUPERFAMILY FYVE/PHD zinc finger 1597 1648 IPR011011 -
Apr2g2138 1651 SUPERFAMILY FYVE/PHD zinc finger 1322 1377 IPR011011 -
Apr2g2138 1651 PANTHER PHD FINGER FAMILY PROTEIN 1 1648 - -
Apr2g2138 1651 CDD PHD_SF 1604 1647 - -
Apr2g2138 1651 SUPERFAMILY FYVE/PHD zinc finger 380 446 IPR011011 -
Apr2g2138 1651 MobiDBLite consensus disorder prediction 1 21 - -
Apr2g2138 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 450 IPR013083 -
Apr2g2138 1651 CDD PHD_SF 1323 1370 - -
Apr2g2138 1651 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1648 - -
Apr2g2138 1651 Pfam DDT domain 183 237 IPR018501 -
Apr2g2138 1651 SMART PHD_3 402 445 IPR001965 -
Apr2g2138 1651 SMART PHD_3 1163 1212 IPR001965 -
Apr2g2138 1651 SMART PHD_3 1323 1371 IPR001965 -
Apr2g2138 1651 SMART PHD_3 1603 1648 IPR001965 -
Apr2g2138 1651 MobiDBLite consensus disorder prediction 126 155 - -
Apr2g2138 1651 ProSiteProfiles Zinc finger PHD-type profile. 400 447 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2138 Apr-Chr2 26551423 26560462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2138 270 532 EF-hand Containing Proteins AT5G22760 51.449 1.53e-80 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Apr2g2138 DDT 3.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2138 - - gmx:100808614 2522.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2138 2 26551423 26560462 Apr2g2138 2 26551423 26560462 ECH
Apr2g2138 2 26551423 26560462 Apr3g1285 3 27331001 27339468 PCT