Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2137 ATGGGGAGCAAGGTGACTGACCACCACGTGTCCACCGTCCGATCCATCGTCGGTTCGGAATTTACCGACATGGACATCATCAGAGCCCTACACATGGCCAAAAACGACGTCACCGCAGCCATCAACATCATCTTCGACACTCACAGTTCCCAAAAATTCAAACTCCCTCGCAACAATAATCCCCAACCACAACCAGTTTCTCCTCTTAAACCAAAACCTACACCTCATCACACTGTCACCGTCAACTCCAAGCACAGTGCCGGTGATGGAGATAACGATAGTAGTAACTGCACTTCTGGCTCCGATGATTGGTGGTTCGTGGCTTGTGGCGAAATGACAGGATTATCCACGTGTAAAGGGAGGACTATAAATTCCGGTGATACAGTGATTTTTAAGTTTCCCAAGAAGGCACTTTCTGCTTCACCTTCGTCGGGTAAGGGTTTCGGACGGTCAGCGACTTGCTCGGAGATAGTTCGGTTCTCCACCGAACACGGTGGCGAGATTGGTAGAATACCGAACGAATGGGCTCGGTGTCTCTTACCTCTTGTGAGAGATAACAAGGTTAGGGTTGAAGGACACTGTAAATTTGCGCCTAATGTTTTGGGCATCATGGACTCTATTACTTTGTCAGTCAGTGTTTTCATCAATAGTTCAGTGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTACCAATTCTACAGATGAATCCGTGTTTCATCCGCTTCCAACCTTGTTTCGGTTGCTAGGCCTGAACCCTTTTAAGAAGGCAGAGTTAACTCCCGGTGAATTCTATTCTAATAAGCGTCCTCTCAGTCAAACGGCCACATTACTACGTGCCAAGTCTGAGCATCCTTCTCAAAATGGTCACAAGAATGACAATGAGGATTCCATTTCTGAAATTGATGTTGACAACATTGTTGGTGTTGGATCAAGCTCAGAGTTAGAGGAAATGGATCCCCCTGGTACTCTTCTGTGTGAACTACGGCCCTATCAAAAACAGGCTCTTTATTGGATGATCCAGATGGAGAAGGGACGGGATATGGATGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCCTATCACCTGGCTGACAAGAGGGAGCTTGCTATTTATTTGAATGCATTTTCTGGTGAAGCAACAACAGAATTTCCTAGCACCCTTCAGATGGCCAGAGGAGGAATTTTAGCAGATGCTATGGGACTTGGAAAAACCATCATGACCATATCCCTTCTCCTTGCCCATTCAGGGAAGGGTGGATCATTGGGCAATCAACCCATAACTCAGTCCTCTATTGAAGGGGGTGAATTTAGTGATACAGTGCACAATTTTTCAAGCATACCTAAGAAGGCAACCAAATTTGCTGGTTTTGATAAACCGACAAAGCAAAAGAATTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTCGGGCAGTGGAAGGCTGAGATTGAAACTCACGCACACCCTGGGTCTCTATCTCTATATGTCCATTATGGACAGAGTAGGCCAAAAGATGCAAAAAGTCTTGCTCAGAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGGATAACGGTGGACTCTTCTCTATTCAGTGGTTTAGAGTGGTTCTTGATGAGGCACATAATATAAAATCTTCTAAAAGCCTAATTTCTATGGCAGCTACTGCTTTAATTGCTGACAGACGTTGGTGTCTAACTGGCACTCCTATTCAGAACAACCTTGAGGATATTTACAGTCTTCTACGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAGCCATTTGAGGGTGGTGATGAAAGAGGCTTGAAGTTAGTTCAGTCCATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGATAATTTACTGTGAACACACAGAAGCTGAAAAGGATTTTTATGAGGCCCTATTCAAAAGATCTAAGGTGAAGTTTGACCAGTTTGTTGAACAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGACAATGTTGTGACCATCCTTTTCTTGTAATGAGTCGCGGTGATACTCAAGACTTTTCCGATCTAAACAAACTAGCAAAGCGCTTCCTTAAAGGAACCCATAATGCCTCTGAAGGTGAAGGAAAAGAAGCACCTTCTCGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAGGGAGAGTGTCCAATATGTCTAGAAGCATTTGAAGATGCAGTCCTGACACCTTGTGCTCACCGCTTGTGTCGGGAATGCCTCCTGGCAAGTTGGCGAAATTCTACTTCTGGTTTATGTCCTGTTTGTAGGAAATTAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAATTGGGTAGAGTCATGCAAGGTAACACTTCTTTTGAATGAACTTGAAAATCTTCGCTCATCAGGCTCCAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTTTTGCAGATTGCCTTTACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTTTGAATCAGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGCGACACCCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGGGTGGGCATTAACCTAACAGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCGGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATTAAACGATTTATTGTGAAGGGCACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCACGAATTGAGGAGTTAAAGATGCTTTTTACTTAG 3036 0.444 MGSKVTDHHVSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHSSQKFKLPRNNNPQPQPVSPLKPKPTPHHTVTVNSKHSAGDGDNDSSNCTSGSDDWWFVACGEMTGLSTCKGRTINSGDTVIFKFPKKALSASPSSGKGFGRSATCSEIVRFSTEHGGEIGRIPNEWARCLLPLVRDNKVRVEGHCKFAPNVLGIMDSITLSVSVFINSSVFGKHHQVSLKDATNSTDESVFHPLPTLFRLLGLNPFKKAELTPGEFYSNKRPLSQTATLLRAKSEHPSQNGHKNDNEDSISEIDVDNIVGVGSSSELEEMDPPGTLLCELRPYQKQALYWMIQMEKGRDMDETATTLHPCWEAYHLADKRELAIYLNAFSGEATTEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSGKGGSLGNQPITQSSIEGGEFSDTVHNFSSIPKKATKFAGFDKPTKQKNSLTSGGNLIICPMTLLGQWKAEIETHAHPGSLSLYVHYGQSRPKDAKSLAQSDVVITTYGILASEFSSENAEDNGGLFSIQWFRVVLDEAHNIKSSKSLISMAATALIADRRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEHTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQDFSDLNKLAKRFLKGTHNASEGEGKEAPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKLISRQDLITAPTENRFQVDIEKNWVESCKVTLLLNELENLRSSGSKSIVFSQWTAFLDLLQIAFTRNNISFVRLDGTLNQQQREKVIKQFSEDSDTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2137 1011 PANTHER DNA REPAIR PROTEIN RAD5 101 1011 - -
Apr2g2137 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 839 IPR013083 -
Apr2g2137 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 642 IPR027417 -
Apr2g2137 1011 Gene3D - 658 1011 IPR027417 -
Apr2g2137 1011 MobiDBLite consensus disorder prediction 280 299 - -
Apr2g2137 1011 SMART ultradead3 325 626 IPR014001 -
Apr2g2137 1011 CDD RING-HC 776 815 - -
Apr2g2137 1011 MobiDBLite consensus disorder prediction 52 96 - -
Apr2g2137 1011 MobiDBLite consensus disorder prediction 285 299 - -
Apr2g2137 1011 SMART helicmild6 875 958 IPR001650 -
Apr2g2137 1011 MobiDBLite consensus disorder prediction 76 96 - -
Apr2g2137 1011 Pfam Helicase conserved C-terminal domain 846 958 IPR001650 -
Apr2g2137 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 846 1011 IPR001650 -
Apr2g2137 1011 SUPERFAMILY RING/U-box 764 822 - -
Apr2g2137 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1000 IPR027417 -
Apr2g2137 1011 Pfam SNF2-related domain 332 720 IPR000330 GO:0005524|GO:0140658
Apr2g2137 1011 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 101 1011 - -
Apr2g2137 1011 ProSiteProfiles Zinc finger RING-type profile. 776 816 IPR001841 -
Apr2g2137 1011 SMART ring_2 776 815 IPR001841 -
Apr2g2137 1011 ProSitePatterns Zinc finger RING-type signature. 791 800 IPR017907 -
Apr2g2137 1011 SMART HIRAN_2 107 215 IPR014905 GO:0003676|GO:0008270|GO:0016818
Apr2g2137 1011 CDD DEXDc_SHPRH-like 329 642 - -
Apr2g2137 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 387 604 IPR014001 -
Apr2g2137 1011 Pfam HIRAN domain 111 211 IPR014905 GO:0003676|GO:0008270|GO:0016818
Apr2g2137 1011 CDD SF2_C_SNF 842 969 - -
Apr2g2137 1011 Pfam Zinc finger, C3HC4 type (RING finger) 773 820 - -
Apr2g2137 1011 Gene3D - 387 654 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2137 Apr-Chr2 26536464 26545944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2137 1 1011 RAD5 or RAD16-like Gene Family AT5G22750 71.401 0.0 1495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr2g2137 SNF2_N 2.3e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2137 K15505 - gmx:100794452 1797.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2137 2 26536464 26545944 Apr2g2137 2 26536464 26545944 ECH