Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr2g2131 | ATGGAATTTTGGGGTGCCGAGGTTAAGGTTGGGGAGGTTGTTAAGGTGGACCCAACCGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAACCGAGTGAACCTGTAGTTGTCTACTTGAAAGTGGGTGATCAGAAATTTGTTTTGGGAACCCTTTCCAAGGAGAAAATTCCTCAAATATCTCTTGAATTAGTGTTGGAAAAGGAGTTTCAGCTTTCCCACAATTCAAAAAATGCCAGCGTGTATTTCTGTGGATACAAGGCATATTATGCTGGGGATGATAGCGAGGAGGATGACTTCACTGATAGTGATGAGGATCTTCCATTGACAAGCACAGAGAATGGAAAACCTGAAACAAAAGCTGACGACTTGAAGGTTCCTGAATCTAAAAAGGTTCCTGAATCTAAAAAACCTGATGCCAAGGTTGGTACATCGGCAAAACAAGTCAAAGTAGTTGAGCCAAAGAAAGACGTTGAAGAGGATTCAGATGATGAATCCGATGAAGATGATGATGACTTTGGAAGTTCTGATGATGAGATGGAGGATGTTGATAATGATAGTGACGATGAGAGTGATAGTGATGAAGACGATGATGTAGAGACCCCTCCAAAGAAGGCTGATCTGGGAAAGAAGAGGCTCAATGACTCTGCATCAAAAACTCCAATTCCTTCCAAGAAATCTAAAAATGCTACACCTGAAAAGACTGATGGTAAGAAAACTGCACATACGGCAACTCCTCACCCTACGAAGAAAGGTGGAAAGACTCCCAACAGTGAAGGCAAGGACCAGACTCCCAAGTCTGGTGGACAATTTTCCTGCAAAAGCTGTAGCAAGGCGTTTACCTCTGAAGGTGGTCTGCAACAACATAGCAAGGCCAAGCATGGTCAGTGA | 915 | 0.435 | MEFWGAEVKVGEVVKVDPTEFEACIHLSQAALGEAKKDKPSEPVVVYLKVGDQKFVLGTLSKEKIPQISLELVLEKEFQLSHNSKNASVYFCGYKAYYAGDDSEEDDFTDSDEDLPLTSTENGKPETKADDLKVPESKKVPESKKPDAKVGTSAKQVKVVEPKKDVEEDSDDESDEDDDDFGSSDDEMEDVDNDSDDESDSDEDDDVETPPKKADLGKKRLNDSASKTPIPSKKSKNATPEKTDGKKTAHTATPHPTKKGGKTPNSEGKDQTPKSGGQFSCKSCSKAFTSEGGLQQHSKAKHGQ* | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr2g2131 | 304 | Gene3D | Classic Zinc Finger | 277 | 304 | - | - | |
Apr2g2131 | 304 | PANTHER | 32 KDA HEAT SHOCK PROTEIN-RELATED | 1 | 300 | - | - | |
Apr2g2131 | 304 | MobiDBLite | consensus disorder prediction | 206 | 222 | - | - | |
Apr2g2131 | 304 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 281 | 302 | IPR013087 | - | |
Apr2g2131 | 304 | MobiDBLite | consensus disorder prediction | 103 | 284 | - | - | |
Apr2g2131 | 304 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 279 | 304 | IPR013087 | - | |
Apr2g2131 | 304 | MobiDBLite | consensus disorder prediction | 124 | 151 | - | - | |
Apr2g2131 | 304 | MobiDBLite | consensus disorder prediction | 266 | 284 | - | - | |
Apr2g2131 | 304 | Pfam | Nucleoplasmin-like domain | 3 | 94 | IPR041232 | - | |
Apr2g2131 | 304 | Gene3D | Nucleoplasmin core domain | 1 | 100 | - | - | |
Apr2g2131 | 304 | SMART | c2h2final6 | 279 | 302 | IPR013087 | - | |
Apr2g2131 | 304 | PANTHER | HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 | 1 | 300 | - | - | |
Apr2g2131 | 304 | MobiDBLite | consensus disorder prediction | 237 | 251 | - | - | |
Apr2g2131 | 304 | MobiDBLite | consensus disorder prediction | 166 | 205 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr2g2131 | Apr-Chr2 | 26493831 | 26497202 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr2g2131 | 1 | 302 | C2H2 Transcription Factor Family | AT5G03740 | 40.062 | 1.98e-52 | 172 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr2g2131 | NPL | 9.9e-14 | CL0055 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr2g2131 | - | - | gmx:100792094 | 363.229 |