Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2131 ATGGAATTTTGGGGTGCCGAGGTTAAGGTTGGGGAGGTTGTTAAGGTGGACCCAACCGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAACCGAGTGAACCTGTAGTTGTCTACTTGAAAGTGGGTGATCAGAAATTTGTTTTGGGAACCCTTTCCAAGGAGAAAATTCCTCAAATATCTCTTGAATTAGTGTTGGAAAAGGAGTTTCAGCTTTCCCACAATTCAAAAAATGCCAGCGTGTATTTCTGTGGATACAAGGCATATTATGCTGGGGATGATAGCGAGGAGGATGACTTCACTGATAGTGATGAGGATCTTCCATTGACAAGCACAGAGAATGGAAAACCTGAAACAAAAGCTGACGACTTGAAGGTTCCTGAATCTAAAAAGGTTCCTGAATCTAAAAAACCTGATGCCAAGGTTGGTACATCGGCAAAACAAGTCAAAGTAGTTGAGCCAAAGAAAGACGTTGAAGAGGATTCAGATGATGAATCCGATGAAGATGATGATGACTTTGGAAGTTCTGATGATGAGATGGAGGATGTTGATAATGATAGTGACGATGAGAGTGATAGTGATGAAGACGATGATGTAGAGACCCCTCCAAAGAAGGCTGATCTGGGAAAGAAGAGGCTCAATGACTCTGCATCAAAAACTCCAATTCCTTCCAAGAAATCTAAAAATGCTACACCTGAAAAGACTGATGGTAAGAAAACTGCACATACGGCAACTCCTCACCCTACGAAGAAAGGTGGAAAGACTCCCAACAGTGAAGGCAAGGACCAGACTCCCAAGTCTGGTGGACAATTTTCCTGCAAAAGCTGTAGCAAGGCGTTTACCTCTGAAGGTGGTCTGCAACAACATAGCAAGGCCAAGCATGGTCAGTGA 915 0.435 MEFWGAEVKVGEVVKVDPTEFEACIHLSQAALGEAKKDKPSEPVVVYLKVGDQKFVLGTLSKEKIPQISLELVLEKEFQLSHNSKNASVYFCGYKAYYAGDDSEEDDFTDSDEDLPLTSTENGKPETKADDLKVPESKKVPESKKPDAKVGTSAKQVKVVEPKKDVEEDSDDESDEDDDDFGSSDDEMEDVDNDSDDESDSDEDDDVETPPKKADLGKKRLNDSASKTPIPSKKSKNATPEKTDGKKTAHTATPHPTKKGGKTPNSEGKDQTPKSGGQFSCKSCSKAFTSEGGLQQHSKAKHGQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2131 304 Gene3D Classic Zinc Finger 277 304 - -
Apr2g2131 304 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 300 - -
Apr2g2131 304 MobiDBLite consensus disorder prediction 206 222 - -
Apr2g2131 304 ProSitePatterns Zinc finger C2H2 type domain signature. 281 302 IPR013087 -
Apr2g2131 304 MobiDBLite consensus disorder prediction 103 284 - -
Apr2g2131 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 304 IPR013087 -
Apr2g2131 304 MobiDBLite consensus disorder prediction 124 151 - -
Apr2g2131 304 MobiDBLite consensus disorder prediction 266 284 - -
Apr2g2131 304 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Apr2g2131 304 Gene3D Nucleoplasmin core domain 1 100 - -
Apr2g2131 304 SMART c2h2final6 279 302 IPR013087 -
Apr2g2131 304 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 300 - -
Apr2g2131 304 MobiDBLite consensus disorder prediction 237 251 - -
Apr2g2131 304 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2131 Apr-Chr2 26493831 26497202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2131 1 302 C2H2 Transcription Factor Family AT5G03740 40.062 1.98e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2131 NPL 9.9e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2131 - - gmx:100792094 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2131 2 26493831 26497202 Apr2g2131 2 26493831 26497202 ECH
Apr2g2131 2 26493831 26497202 Apr3g1280 3 27265866 27268806 PCT