Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2119 ATGGACGTTGAGAATGAGTCTGTTTACCATTCCTCTTCACCATCCTCCACTTCTTCTCAAAATCATTCATCAAGTACTCAAGAAAAGACACCCTTGAGCTCTCGCAAGCGGAAAGCGGGGAGAAAGAAGTTCAAGGAGACACGTCACCCAGTGTATAGAGGGGTTCGACAAAGAAACGGTAACAAATGGGTGTGTGAAGTTCGAGAACCAAACAAGAAATCAAGGATATGGCTTGGGACTTACCCTACACCAGAAATGGCAGCTAGGGCACATGATGTGGCTGCCCTAGCACTTAGGGGCAACTCAGCGGTGCTAAATTTTCCTTATTCAGTTTCTCTTCTTCCGCTTGCAAAGTCATCTTCAGCTGCACATATAAGAGAAGCTGCATCAAAAGTTTCAAAGGTTTTTGGACCAACCACTTCTCCTTCATCTTCTGCCAACCCTTGTTGTGAAGAGGGTGAGAGCCAAGAAAGGGTAGAGGGTGGTGATGATCTTGTCATGACACAAGATAATAAGGTTATTGATCACGAGTCAAAGCCAGTGTTCTTTGATGAGGAGGCATTGTATAATATGCCAGGTTTGTTAGATAGTATGGCAGAGGGTTTGCTTATTACCCCTCCGTCTATGAAGAGAGCATTTGATTGGGACGATGTTGATTGTGAAACAGATCTCCCTCTTTGGACAGATTAA 690 0.4435 MDVENESVYHSSSPSSTSSQNHSSSTQEKTPLSSRKRKAGRKKFKETRHPVYRGVRQRNGNKWVCEVREPNKKSRIWLGTYPTPEMAARAHDVAALALRGNSAVLNFPYSVSLLPLAKSSSAAHIREAASKVSKVFGPTTSPSSSANPCCEEGESQERVEGGDDLVMTQDNKVIDHESKPVFFDEEALYNMPGLLDSMAEGLLITPPSMKRAFDWDDVDCETDLPLWTD* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2119 229 MobiDBLite consensus disorder prediction 1 30 - -
Apr2g2119 229 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Apr2g2119 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 228 IPR045277 GO:0003700
Apr2g2119 229 SUPERFAMILY DNA-binding domain 51 110 IPR016177 GO:0003677
Apr2g2119 229 MobiDBLite consensus disorder prediction 35 49 - -
Apr2g2119 229 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 4 228 - -
Apr2g2119 229 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Apr2g2119 229 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Apr2g2119 229 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Apr2g2119 229 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Apr2g2119 229 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Apr2g2119 229 MobiDBLite consensus disorder prediction 1 55 - -
Apr2g2119 229 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2119 Apr-Chr2 26381105 26381839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2119 23 228 AP2-EREBP Transcription Factor Family AT5G51990 48.058 2.95e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr2g2119 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2119 - - gmx:100803317 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2119 2 26381105 26381839 Apr2g2119 2 26381105 26381839 ECH
Apr2g2119 2 26381105 26381839 Apr3g1270 3 27172259 27172984 PCT