Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2115 ATGAAGGTTATCGCCGCTTATTTGCTTGCAGTATTGGGAGGGAACTCTTCTCCTTCTGCTGCTGATCTCAAACACATCCTTGGCTCTGTTGGAGCTGATGCTGAGGATGAGATGATTGATTTGCTCATCAATGAAGCCAAGGGAAAAGATTTCAGTGAGCTAATTGCTAGTGGAAGAGAACAGATGGCTGCAGGAGGAGCTGCAGGTGGTGGTGCTGTTGCTGTCGCTGCCGCACCTGCAGGAGGTGCTGCAGCTGGTGGTGCTGCACCTGCTGCCGAAGCAAAGGAGGAAAAGAAGGTGGAAGAGAAGGAGGAATCTGACGATGATATGGGCTTCAGTCTTTTCGACTAG 351 0.5071 MKVIAAYLLAVLGGNSSPSAADLKHILGSVGADAEDEMIDLLINEAKGKDFSELIASGREQMAAGGAAGGGAVAVAAAPAGGAAAGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2115 116 CDD Ribosomal_P2 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Apr2g2115 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Apr2g2115 116 Pfam 60s Acidic ribosomal protein 17 115 - -
Apr2g2115 116 Gene3D - 1 59 IPR038716 -
Apr2g2115 116 Hamap 50S ribosomal protein L12 [rpl12]. 2 116 IPR027534 GO:0003735|GO:0005840|GO:0006414
Apr2g2115 116 MobiDBLite consensus disorder prediction 92 106 - -
Apr2g2115 116 MobiDBLite consensus disorder prediction 83 116 - -
Apr2g2115 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2115 Apr-Chr2 26355173 26356564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2115 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 62.857 9.73e-26 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2115 K02943 - ming:122089001 118.242