Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2103 ATGAGTTTGAGGGAGTGCAATGTAGAAGACAAGAATCTATACCTTCAAACCCCAACTTTCATTGAGTGGCTCAAACCATCTTCCTCTCTAACTACTTCAATATCATCCTCTCCTTCTTTGACACGGCATGAACTTGTCCATGAAACTATCCAGTTTTTTCCCTTCAAGGAAGACCATGGAGTGCAAAAGGAAGGGTCTGAAGTAAAAGAAGAGAAGGTGGAACAAGTGACTGTGGCTTTGCACATTGGATTGCCCAACACAAGAGGTCCTGATGATGATGATGATGATGAGAAGAAGGTTTTCCTTGTTAAGGAAGAAGAACCCTTGAAAAGCTTTCATGAGTGTTCTTTTAACCAGGAGAGAAGGTTTTGGATACCAACTCCTTCCCAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGCTCAGAATTTAGGAAAGGACCAGACTCACTAAGAGGAACACAGCCAGCTGCAATGCTAAGGCTACCATGTTACTGTTGTGCACAGGGTTGCAAGAATAACATAAATCATCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACACTCCAAACCCACTACAAAAGAAAACATGGGGCAAAACCATTTATGTGTAGAAAATGTGCAAAAACCTTTGCAGTTAAAGGGGATTGGAGGACTCATGAAAAGAACTGTGGCAAGTTATGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCCCTCAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCCCCGCATCCTTCTCTTGAAGGCATGGTTGAGGATGAGAAGGAATGCATTACTGGGTCTGATGAAGATGAAGTTGCTCATACATGA 906 0.4227 MSLRECNVEDKNLYLQTPTFIEWLKPSSSLTTSISSSPSLTRHELVHETIQFFPFKEDHGVQKEGSEVKEEKVEQVTVALHIGLPNTRGPDDDDDDEKKVFLVKEEEPLKSFHECSFNQERRFWIPTPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGMVEDEKECITGSDEDEVAHT* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2103 301 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Apr2g2103 301 Gene3D Classic Zinc Finger 137 160 - -
Apr2g2103 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Apr2g2103 301 Gene3D Classic Zinc Finger 220 270 - -
Apr2g2103 301 PANTHER ZINC FINGER PROTEIN WIP2 44 300 IPR043584 GO:0003700|GO:0010468
Apr2g2103 301 PANTHER ZINC FINGER PROTEIN WIP2 1 40 IPR043584 GO:0003700|GO:0010468
Apr2g2103 301 SUPERFAMILY beta-beta-alpha zinc fingers 39 160 IPR036236 -
Apr2g2103 301 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 40 - -
Apr2g2103 301 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 44 300 - -
Apr2g2103 301 SUPERFAMILY beta-beta-alpha zinc fingers 208 242 IPR036236 -
Apr2g2103 301 SMART c2h2final6 138 160 IPR013087 -
Apr2g2103 301 SMART c2h2final6 185 217 IPR013087 -
Apr2g2103 301 SMART c2h2final6 222 242 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2103 Apr-Chr2 26259902 26262592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2103 7 291 C2H2 Transcription Factor Family AT1G08290 56.548 3.60e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2103 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2103 - - gmx:100819306 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2103 2 26259902 26262592 Apr2g2103 2 26259902 26262592 ECH
Apr2g2103 2 26259902 26262592 Apr3g1245 3 26930110 26933394 PCT