Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2084 ATGGTCGACCTCCCACCTGGTTTTCGATTTTACCCAACAGAAGAAGAGCTTGTTGGCTGCTATCTGCACAACCAGCTAGAAGGGCAACGACCTGACATTAGCAGAGTTATCCCAGTAATTGACATCAATGGCGTAGAGCCATGGAACCTTCCAACACTTGCAGGGGAGCTATGTCGTGGAGACACGGAGCAATGGTTTTTCTTTTCACCCAGACAAGAGAGAGAGGCCAGAGGAGGGAGACCCAACAGAACCACGGCTTGTGGGTATTGGAAAGCCACGGGTTCTCCTGGTCACGTTTACTCTTCCGACAGCAAAGTCATTGGAATCAAGAAAACCATGGTATTTTACAAAGGGAAAGCTCCTACTGGTAGGAAAACCAAATGGAAGATGCATGAGTACAAAGCCATTGAACATTCTCACCAATCCAACACAACCCCTCCAAAGTTGAGGCACGAATTCAGCTTGTGCCGAGTTTATGTTATATCGGGAAGCTTTCGATCGTTTGATCGACGGCCACTAGAGAGGGAAAGAGGGGAGTTAAGAATTGAAGGCGGAAGAGGTGGTGCTTCAACAAGTGCTCAGACGCAGGAAGCACCGCCGGCAGTGGAAGAGGGATCAAGCTCGTCTGACACTTCCCATGCTGTAGGAGGAGGTGGGGACCACAGTGCTGTTCATATCTCACAAACTGGGGCATGCTCAAGCGCTACAAATTGGAATCAACATGATGGGGTTGAAGTACCACTTTGGGAATGGGAACAACTTAATTGGAACTAA 774 0.4871 MVDLPPGFRFYPTEEELVGCYLHNQLEGQRPDISRVIPVIDINGVEPWNLPTLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTACGYWKATGSPGHVYSSDSKVIGIKKTMVFYKGKAPTGRKTKWKMHEYKAIEHSHQSNTTPPKLRHEFSLCRVYVISGSFRSFDRRPLERERGELRIEGGRGGASTSAQTQEAPPAVEEGSSSSDTSHAVGGGGDHSAVHISQTGACSSATNWNQHDGVEVPLWEWEQLNWN* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2084 257 MobiDBLite consensus disorder prediction 179 225 - -
Apr2g2084 257 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Apr2g2084 257 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Apr2g2084 257 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Apr2g2084 257 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 256 - -
Apr2g2084 257 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Apr2g2084 257 MobiDBLite consensus disorder prediction 188 215 - -
Apr2g2084 257 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2084 Apr-Chr2 26131068 26132102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2084 7 256 NAC Transcription Factor Family AT5G22380 55.777 5.88e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g2084 NAM 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2084 - - gmx:100784960 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2084 2 26131068 26132102 Apr2g2084 2 26131068 26132102 ECH
Apr2g2084 2 26131068 26132102 Apr3g1225 3 26760796 26762037 PCT