Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2062 ATGGCGACGTACTTTCACGGAAACACTTCTGAAATTCAATCTTCCGCAGATGGTTTGCAAACACTTTACCTTATGAACCCAACTTACGTACCCTACACTGACGCGCCGCACCCACCAACGCCCAACATGCTCCTCGTAAATCCCAACGCGCTCAACCTCGCCAACCTCCCCCACGCGCCTTCACTCTCACCTTCCCCCAACCAACAACAGCACCTGATCCAAGGGGTAACAAGCATCCTCGGATCCACTAACTCCGGGGATCACACGCGACCTTCGTCGTTCGGAAACCAAGAGAACATCACTACCTTCCACGGCTTCTCCTCCTCAGCCGCCGCCGCAGCTCCACGAGTTCACTATAACTTATGGGGTCAGGTGATTGATCAACCATCGTCGGCGGCGGCAACTCCCTCTAGCAGCTCCGGCGGCGGAGGTTTCCGGCGGCCTAGTCAGCAGGGGTTGTCGCTAAGCCTTTCGTCGCAGCAAACGGCTTACAGGTCGGTTTCCGGGGAGGTCGACGTTCCGGGTCACGTAACCGGAATCGGGAACTCTCCGTCGTCGGCGTCGAACGGAGTTTCGGGTATGCACGGCGTCATGTTGGGGTCTAAGTATTTGAAAGCCGCGCAAGAGCTTCTAGATGAAGTTGTTAACGTGGGGAAGGGAATCTACAGAGAGGAAAATAAAGAGAAGGTGAAAGTGAATAGGGAATCTACTACATCTGGGGTTGGTGGTGATGGTTCAAGTGGTGGGGGAGAAAACAGTGCAGGGAAACAAGTAGTTGAACTTAGCACTGCTCAGAGACAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCAGCATGCTCGATGAGGTAGAGCAAAGGTACAGGCAATATTACCACCAAATGCAAGTTATAATATCGTCATTTGAGCAAGCCGCGGGATTTGGGGCGGCAAAATCTTACACAGCTCTTGCCCTAAAGACTATATCAAAGCAATTTCGATGCCTTAAAGATGCAATCTCAGCACAAATAAAGGCAACGAGCAAGACATTGGGAGAAGATGATTGCTTAGGAATTAAAGTAGAAGGGTCGAGGCTTAGGTATGTTGACCACCATCTCCGGCAACAACGGGCACTTCAACAGCTAGGAATGATTCAGCCGAATGCTTGGAGGCCCCAAAGAGGCTTACCTGAACGAGCCGTTTCTATTCTTCGCGCTTGGCTTTTTGAGCATTTCCTTCACCCCTATCCAAAGGACTCCGATAAAGTTATGCTTGCTAAACAAACTGGACTTGCTAGGAGCCAGGTGTCAAACTGGTTTATTAATGCCCGAGTTCGGCTGTGGAAACCAATGGTTGAAGAAATGTACATGGAAGAAATGAAGGAGCATGAACAAGCTAATGGTTCAGATAACACCAGATCAAAAGAGTCCAGCAAGGAGTTGGGGTCAACCGCAAATGTTGCACCGGAATCAATCAGTGCTATTAAACTCGATCATCTCCAATCAAAACAAGAAAGCTTCAACAACCGAAACACTACTTCTCCAACTGAGATCTCAACAAACTCTTCAATGTCTCCAATTGGAGGATCCCTTCAATCCCACTCTGGTAATTTCCATTTTGCAGGTTCATCTGACATGCAAATTAGGAGTCCAAACAAGCCAAGAAATTCGGAAATACAGAACTCTCCAAGTAGTATCCTTTCAGTGGACATGGAAATGAAGCATGGCGAGCATGCAAATAGAGAAGCCAACAAAAAGTTTGGTATAGAAAGGCACCACAAAGATGGATACCCTTTGATGAGTGGCAATACAAACCATGGTGGGGGTTTTGGAGCCTTCTTCATGGAAGACATTGGAAGCAGGTTCAACGTTACTACTGAACAATTAGCTTCAAGGTTCCACGGAAATGGTGTTTCTCTCACTCTTGGACTCCCTCACAATGAAAACCTTCCTATCTCAGGAACTCAACATGGATTTCTCTCACAGAATATACATTTGGGAAGGAGACTTGAAATGGGACCAAATGGAAATGAGTTTTGTGCTATCAACACTCCACCTTCTTCTCACTCAGGCACCACTTATGAGAGCATCGACATTCAAAACAGAAAGAGATTTGCTGCTCAGTTATTGCCAGATTTCGTGGCCTAA 2124 0.4755 MATYFHGNTSEIQSSADGLQTLYLMNPTYVPYTDAPHPPTPNMLLVNPNALNLANLPHAPSLSPSPNQQQHLIQGVTSILGSTNSGDHTRPSSFGNQENITTFHGFSSSAAAAAPRVHYNLWGQVIDQPSSAAATPSSSSGGGGFRRPSQQGLSLSLSSQQTAYRSVSGEVDVPGHVTGIGNSPSSASNGVSGMHGVMLGSKYLKAAQELLDEVVNVGKGIYREENKEKVKVNRESTTSGVGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVSMLDEVEQRYRQYYHQMQVIISSFEQAAGFGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGIKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYMEEMKEHEQANGSDNTRSKESSKELGSTANVAPESISAIKLDHLQSKQESFNNRNTTSPTEISTNSSMSPIGGSLQSHSGNFHFAGSSDMQIRSPNKPRNSEIQNSPSSILSVDMEMKHGEHANREANKKFGIERHHKDGYPLMSGNTNHGGGFGAFFMEDIGSRFNVTTEQLASRFHGNGVSLTLGLPHNENLPISGTQHGFLSQNIHLGRRLEMGPNGNEFCAINTPPSSHSGTTYESIDIQNRKRFAAQLLPDFVA* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2062 707 Coils Coil 266 286 - -
Apr2g2062 707 SMART prehox3 192 334 IPR006563 -
Apr2g2062 707 SMART HOX_1 382 446 IPR001356 GO:0003677
Apr2g2062 707 MobiDBLite consensus disorder prediction 130 167 - -
Apr2g2062 707 MobiDBLite consensus disorder prediction 453 469 - -
Apr2g2062 707 MobiDBLite consensus disorder prediction 79 100 - -
Apr2g2062 707 Pfam Associated with HOX 198 333 IPR006563 -
Apr2g2062 707 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 656 - -
Apr2g2062 707 MobiDBLite consensus disorder prediction 235 256 - -
Apr2g2062 707 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Apr2g2062 707 CDD homeodomain 382 442 IPR001356 GO:0003677
Apr2g2062 707 MobiDBLite consensus disorder prediction 492 555 - -
Apr2g2062 707 Gene3D - 385 464 - -
Apr2g2062 707 MobiDBLite consensus disorder prediction 229 256 - -
Apr2g2062 707 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Apr2g2062 707 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 656 - -
Apr2g2062 707 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Apr2g2062 707 MobiDBLite consensus disorder prediction 453 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2062 Apr-Chr2 25938589 25943557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2062 1 707 Homeobox Transcription Factor Family AT2G35940 43.041 1.05e-144 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr2g2062 POX 5.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2062 - - gmx:100779075 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2062 2 25938589 25943557 Apr2g2062 2 25938589 25943557 ECH
Apr2g2062 2 25938589 25943557 Apr3g1198 3 26481421 26486261 PCT