Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2060 ATGGCCGAAATTGAAATTCCTGAATTTTTCGTTTGTCCCATTTCGCTTCAGATCATAAAGGACCCCGTGACGACCGTTACAGGCATAACATACGACAGAGAAAGCATCGAACACTGGTTGCTAACGTCAAAAGAATGTTCTTGTCCTGTCACAAAGCAACCATTACCAAGAAGCTTAGAGTTCTTAACCCCTAACCACACACTTCGCAGGCTAATCCAAGCGTGGTGCTCAGCAAACGAAGCCAATGGGGTTGATCAAATTCCAACCCCAAAATCCCCTCTTGCCAAGACCCATGTTGAGAAACTCGTGAAGGATCTCCAAGTTCCTCGATACTCTCAAACGGCATTGGAAAAATTGCACGCTCTTGCTATAGAGAGTGAGAGGAACAGAAGGTGCATGGCTTCAGCAGGAGTAGATGAAGCTATGGTTCACGTAATCATAAAGAGTTTCAAGCAAGGTAAAACGACGTCGTGCCTCGAAGAAGCTCTGAGAATCCTTCGTCTACTTTGGAGCCCTTCCGTTGTGGCCGACAACAACAACAACAACATGAAGCTCATGGTTGGTGAAAACATTGACTTTCTCAACTCGTTGACTTGGGTTTTGCAACTTCATGTTAATAACAAGGTCAAGATAATCAACGAAGCAATGCCTATACTGAAAATGGTTATCGAAGTGAAAGATTCAACCCCTTTAGGAAATTTGAAGCTTGAATTCTTTGGAGTAATTGTAAGTGTTATGAAAAATAGAGCACTCTCTCAACAAGCTATTAAATCTGCATTGCATGTGCTTATAGAAACGTGTCCTTTGGGAAGAAATAGAATGAAGATTGTGGAAGCAGGTGCAGTTGTTGAACTTGTTGAGCTTGCACTTGAAAAACCAGAAAAGAACCTAACAGAACTCATTTTCATTCTTCTGGCACATTTGTGTTCTTGTGCTGATGGAAGAGAACAGTTTGTGCAGCATGCTGCAGGCATTGCTGTGATTTCTAAAAGGACACTCAGGGTTTCTCCAACAATTGATGATCGAGCTCTTCATATATTTTCTTTGATTTCTAAGTTCTCAGCTTCAAAAGAGGTTGTTCAGGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCGGATTGTGCTTCCTATTTGAAAGATAAAGCAAGGGGTATACTTAGGTTACACTCCAAAGCATGGAATAATTCTCCTTGTATTCAAGTATATTTGTTAACCAGATACCAAAGGTGA 1248 0.4167 MAEIEIPEFFVCPISLQIIKDPVTTVTGITYDRESIEHWLLTSKECSCPVTKQPLPRSLEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLAKTHVEKLVKDLQVPRYSQTALEKLHALAIESERNRRCMASAGVDEAMVHVIIKSFKQGKTTSCLEEALRILRLLWSPSVVADNNNNNMKLMVGENIDFLNSLTWVLQLHVNNKVKIINEAMPILKMVIEVKDSTPLGNLKLEFFGVIVSVMKNRALSQQAIKSALHVLIETCPLGRNRMKIVEAGAVVELVELALEKPEKNLTELIFILLAHLCSCADGREQFVQHAAGIAVISKRTLRVSPTIDDRALHIFSLISKFSASKEVVQEMLRVGAVSKLCMVMQADCASYLKDKARGILRLHSKAWNNSPCIQVYLLTRYQR* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2060 415 SUPERFAMILY ARM repeat 110 392 IPR016024 -
Apr2g2060 415 Gene3D - 99 401 IPR011989 -
Apr2g2060 415 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 413 - -
Apr2g2060 415 PANTHER WDSAM1 PROTEIN 1 413 IPR045185 GO:0061630
Apr2g2060 415 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Apr2g2060 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Apr2g2060 415 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Apr2g2060 415 SUPERFAMILY RING/U-box 4 84 - -
Apr2g2060 415 CDD RING-Ubox_PUB 10 53 IPR045210 -
Apr2g2060 415 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2060 Apr-Chr2 25930102 25931349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2060 3 413 U-box Gene Family AT2G35930 41.346 2.20e-105 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2060 - - gmx:100787419 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2060 2 25930102 25931349 Apr2g2060 2 25930102 25931349 ECH
Apr2g2060 2 25930102 25931349 Apr3g1196 3 26466724 26467968 PCT