Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2059 ATGGATGAAATTGAGATTCCTTCTCATTTTCTCTGCCCCATTTCCCTACAACTTATGAGAGACCCTGTAACAGTTTGCACAGGAATCACTTACGATAGAGAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAACACTTGCCCTGTTACTAAGCAGTGCCTATTAGACACTGATCTCACACCAAACCACACTCTACGCAGGTTGATCCAAGCTTGGTGCACCCTGAATGCCTCACTTGGAGTTGAACGCATTCCAACTCCAAAACCACCCATTGACAGAACTCACATTGTGAAACTCCTCTCTGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAATGCCTCCGAAGACTTCGATCCATTGCTTTTGAGGGCCAAAGGAACAAAAACTGTTTGGAGTCTGCAGGAGCAATAGAGTTCTTGGCTTCAACCATGAAAAACAATATACAAGAAGATTCATCAACTGTTTTTAGTGAAGCAGCTATTGAAGTGCTGTTTCACTTGAATCTTTCTGAGGCTCAGCTTAAAAGTCTTATAAACAACGAGGGTATTCAGTTTATTGAGTCACTGTTTCAAGTTTTGAGGCTTGGAAACTACCAATCTAGAGCTTATGCAACCATGCTATTGAGATCAGCATTTGAGGTAGCTGATCCAATCCAATTGATAAGTGTCAAAACTGTGCTGTTTGTGGAAATAATGAGAGTGCTATGTGATAAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTTATTGTGGAGCTTTGTCCATGGGGAAGAAACAGGATCAAAGCAGTGGAGGGTGGTGCAGTTTCAGTCCTCATTGAGCTCCTTCTTGATGCCTCGGAAAGAAGAGCATGTGAACTTATGCTAATAGCTTTGGATCAACTTTGTGGATGTGCTGAAGGGCGTGCAGAGTTGTTGAACCATGGGGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGATTTCCCATGTGGCCAGTGATAGAGGGGTTAGAATTTTGACCTCAATTTGTAGGTATTCGGCCAATTCTAGAGCCCTTCATGAAATGTTGCAAGTTGGGGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGGATAGCAGTTTCAAGACAAAGGAGAGGGCCAAGGAGATACTCAAATTGCACTCCTCGGTTTGGAAGAATTCCCCCTGTATTCCTGTACCTTTGCTATCATCTTATCCATGA 1212 0.4299 MDEIEIPSHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLDTDLTPNHTLRRLIQAWCTLNASLGVERIPTPKPPIDRTHIVKLLSEAKRFPEKQLKCLRRLRSIAFEGQRNKNCLESAGAIEFLASTMKNNIQEDSSTVFSEAAIEVLFHLNLSEAQLKSLINNEGIQFIESLFQVLRLGNYQSRAYATMLLRSAFEVADPIQLISVKTVLFVEIMRVLCDKISQQASKAALKLIVELCPWGRNRIKAVEGGAVSVLIELLLDASERRACELMLIALDQLCGCAEGRAELLNHGAGVAIVSKKILRISHVASDRGVRILTSICRYSANSRALHEMLQVGAVSKLCLVLQVDSSFKTKERAKEILKLHSSVWKNSPCIPVPLLSSYP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2059 403 SUPERFAMILY ARM repeat 97 381 IPR016024 -
Apr2g2059 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Apr2g2059 403 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Apr2g2059 403 Gene3D - 94 390 IPR011989 -
Apr2g2059 403 PANTHER OS11G0573500 PROTEIN 1 403 - -
Apr2g2059 403 SUPERFAMILY RING/U-box 3 77 - -
Apr2g2059 403 PANTHER WDSAM1 PROTEIN 1 403 IPR045185 GO:0061630
Apr2g2059 403 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Apr2g2059 403 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Apr2g2059 403 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2059 Apr-Chr2 25915544 25916755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2059 2 403 U-box Gene Family AT2G35930 55.911 6.85e-166 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2059 - - gmx:100778012 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2059 2 25915544 25916755 Apr2g2059 2 25915544 25916755 ECH
Apr2g2059 2 25915544 25916755 Apr3g1195 3 26450310 26451533 PCT