Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2050 ATGTTTGGGAGGGCACCGAAGAAAAGCGACAACAGCAAGTACTATGAAATTCTTGGTGTTTCGAAGAACGCTTCTCAGGATGATCTGAAGAAGGCTTACAAGAAAGCCGCCATAAAAAATCACCCTGACAAAGGTGGTGATCCTGAGAAGTTCAAAGAGCTGGCTCAAGCCTATGAGGTTCTGAGTGACCCCGAGAAGCGTGAGATCTACGATACTTACGGTGAAGATGCTCTGAAGGAAGGAATGGGAGGTGGCGGTGGTGGCCATGATCCTTTTGATATCTTCTCGTCGTTCTTCGGAGGTTCTCCATTTTCGACTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCACCCCTTGAAGGTCTCTTTGGAGGATCTTTACCTTGGAACGTCTAAGAAGCTCTCTCTTTCACGAAATGTCCTATGCTCTAAATGCAATGGGAAAGGGTCTAAGTCTGGGGCTTCCATGAAGTGTGCGGGTTGCCAAGGTTCTGGTATGAAGGTCTCTATTAGGCACCTCGGTCCCTCTATGATTCAGCAAATGCAGCATGCTTGCAATGAATGTAAGGGTACTGGAGAGACAATCAGTGACAGAGACAGATGCCCACAGTGCAAGGGAGAGAAGGTTGTCCAAGAGAAGAAAGTACTTGAAGTTATTGTGGAGAAGGGGATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCCGATACAGCTACTGGGGATGTTGTCTTTGTCCTACAACAAAAGGAACATCCTAAGTTCAGAAGAAAGGGTGAAGACCTTTTTGTAGAGCACACCCTGTCCCTCACTGAGGCTCTATGTGGCTTCCAATTTGTGCTCACTCACTTGGATGGACGACAACTCCTTATCAAAACGAACCCTGGGGAGGTTGTTAAGCCTGATTCGTACAAGGCAATAAATGATGAGGGAATGCCAATGTACCAGAGGTCCTTCATGAAGGGGAAGCTTTACATTCGATTCACTGTGGAATTCCCCGATTCTCTGAGTGTGGATCAGGTGAAGGCCTTAGAGGGTGTTCTGCCTCCAAGGCCTTCATCACAGTTGACCGACATGGAGCTGGACGAGTGTGAGGAGACTACTCTTCATGATGTGAATATGGAGGAAGAGGCAAGGAGGAGGCAGCAGGCTCAGCAGGAGGCATATGAAGAGGATGAAGATATGCACGGTGGTGCTCAGAGAGTACAGTGCGCCCAGCAGTAG 1251 0.486 MFGRAPKKSDNSKYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDTYGEDALKEGMGGGGGGHDPFDIFSSFFGGSPFSTGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMKCAGCQGSGMKVSIRHLGPSMIQQMQHACNECKGTGETISDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTATGDVVFVLQQKEHPKFRRKGEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKTNPGEVVKPDSYKAINDEGMPMYQRSFMKGKLYIRFTVEFPDSLSVDQVKALEGVLPPRPSSQLTDMELDECEETTLHDVNMEEEARRRQQAQQEAYEEDEDMHGGAQRVQCAQQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2050 416 Pfam DnaJ C terminal domain 121 342 IPR002939 -
Apr2g2050 416 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 7 416 - -
Apr2g2050 416 CDD DnaJ_C 118 345 - -
Apr2g2050 416 CDD DnaJ 14 63 IPR001623 -
Apr2g2050 416 MobiDBLite consensus disorder prediction 378 416 - -
Apr2g2050 416 Gene3D - 110 259 - -
Apr2g2050 416 Pfam DnaJ domain 13 71 IPR001623 -
Apr2g2050 416 MobiDBLite consensus disorder prediction 378 407 - -
Apr2g2050 416 SUPERFAMILY Chaperone J-domain 9 105 IPR036869 -
Apr2g2050 416 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 216 IPR036410 -
Apr2g2050 416 Gene3D - 147 213 - -
Apr2g2050 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 353 IPR008971 GO:0006457|GO:0051082
Apr2g2050 416 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Apr2g2050 416 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Apr2g2050 416 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 416 IPR044713 GO:0006457|GO:0030544
Apr2g2050 416 Coils Coil 381 403 - -
Apr2g2050 416 PRINTS DnaJ domain signature 15 33 IPR001623 -
Apr2g2050 416 PRINTS DnaJ domain signature 46 66 IPR001623 -
Apr2g2050 416 PRINTS DnaJ domain signature 66 85 IPR001623 -
Apr2g2050 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 118 262 IPR008971 GO:0006457|GO:0051082
Apr2g2050 416 SMART dnaj_3 12 66 IPR001623 -
Apr2g2050 416 Hamap Chaperone protein DnaJ [dnaJ]. 10 368 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Apr2g2050 416 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
Apr2g2050 416 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Apr2g2050 416 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Apr2g2050 416 Gene3D DnaJ domain 10 109 IPR036869 -
Apr2g2050 416 Gene3D - 261 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2050 Apr-Chr2 25815191 25820848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2050 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 6.29e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2050 K09503 - gmx:100808604 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2050 2 25815191 25820848 Apr2g2050 2 25815191 25820848 ECH
Apr2g2050 2 25815191 25820848 Apr3g1188 3 26379277 26381744 ECH
Apr2g2050 2 25815191 25820848 Apr3g1188 3 26379277 26381744 PCT