Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2046 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGTTGACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCGGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACCCTCAGAGATTTTCTACTGTTGCTAAGTTACAGAGACAGCATCAGCACCTAAGCATTCAAGAATCTAGCAGCAAGGAACTAGGATCATCATCAAAATGCAAATCATTCGAGCCTGTAGACCATGAGCAGCCTAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGATTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGAGAAGCATTCAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGCAGGGAGATGGAACTCAAAAGTCTAACGGATTCTACTGA 570 0.4386 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTFPSQDPQRFSTVAKLQRQHQHLSIQESSSKELGSSSKCKSFEPVDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQQGDGTQKSNGFY* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2046 189 SUPERFAMILY HMG-box 110 158 IPR036910 -
Apr2g2046 189 PANTHER PROTEIN YABBY 6-RELATED 3 189 IPR006780 GO:0007275
Apr2g2046 189 MobiDBLite consensus disorder prediction 79 120 - -
Apr2g2046 189 Pfam YABBY protein 7 165 IPR006780 GO:0007275
Apr2g2046 189 MobiDBLite consensus disorder prediction 79 93 - -
Apr2g2046 189 MobiDBLite consensus disorder prediction 97 114 - -
Apr2g2046 189 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 189 - -
Apr2g2046 189 Gene3D High mobility group box domain 103 162 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2046 Apr-Chr2 25776317 25785130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2046 1 189 C2C2-YABBY Transcription Factor Family AT1G08465 63.351 5.55e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Apr2g2046 YABBY 2e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2046 K25796 - gmx:100785458 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2046 2 25776317 25785130 Apr3g1185 3 26350309 26358384 PCT