Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2043 ATGGAGGGTTCTGTGATTGAAGAGAATAATGATAATACTAAGTCTGAGGCGCATTTGACTTCTGCTGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGCCTTTTGTGATAGTGATCCTTCCACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAGTGTATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGTCAAGACTTGCTTGAGGCGGTGGAAAGAGAGAGGAACTTTAGGTTCAATCCAGCTAGAAATGCCACAATATTTCATCATCCAACTCTAGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAATGATGCTGATCTTGAAGAGCGTATAATCCAACACTTGGCTGCTGCAGCAGCGATGGGACGGGCACGCCACATTGCTAGAAGGGAAGGCCAAAGAAACAGGTCATCAGCTCAAGGTCGTCCTCATTTTTTGGTTTTTTCAACTCATCCTAATTCACCTCCCATGGCTCCTACTTCATCCTCTCCTACTCATAGGGGGGATGATGAACCAACTCCTGCAATTGCTGTTGGCAATCCATCTCCAATTCTTACTACTGGAGAAGAATCATCACAGCTGACTTTAGTTCCTTCTGTTCAAGTGGACCAAGTTTCTGCTTCAGGATCTGGATCTACTGCTCTTGCTACAGATAATCAGGGATCATCTTACAACAATAGGAGATCTCCTAATCAGTCATCTCCCAGTAGTCAAGATAGAGCAGGGCCATCAGAATTCCAGTCTTTTTCAGAATCACTGAAATCTAAACTGAATGCTGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAACACCTCTATGTCTGATATTGGATCCGAAGTTAGGCCAGAAGTTAATGCAGGGATTGCAACCGCAACGCGCATGATGGAACACCTGGAGACTGGAGACAGGAATAGAAGCAATAGCAATTCTACTCCCAATAATTTAGAGGATGGTTCAGTTCAGGGATCTAATGATCATCCTTTGGCAGGCACTGAAGGGGATGGTATTTTGAAAGACAACAACACAAAAAGTTCTTGTGCTGCAGGCTCCAGTTCAAATTAA 1185 0.4456 MEGSVIEENNDNTKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQDLLEAVERERNFRFNPARNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPTSSSPTHRGDDEPTPAIAVGNPSPILTTGEESSQLTLVPSVQVDQVSASGSGSTALATDNQGSSYNNRRSPNQSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNTSMSDIGSEVRPEVNAGIATATRMMEHLETGDRNRSNSNSTPNNLEDGSVQGSNDHPLAGTEGDGILKDNNTKSSCAAGSSSN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2043 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 10 394 - -
Apr2g2043 394 MobiDBLite consensus disorder prediction 378 394 - -
Apr2g2043 394 SUPERFAMILY RING/U-box 31 87 - -
Apr2g2043 394 MobiDBLite consensus disorder prediction 337 394 - -
Apr2g2043 394 ProSiteProfiles Zinc finger RING-type profile. 38 78 IPR001841 -
Apr2g2043 394 MobiDBLite consensus disorder prediction 181 196 - -
Apr2g2043 394 MobiDBLite consensus disorder prediction 345 367 - -
Apr2g2043 394 SMART ring_2 38 78 IPR001841 -
Apr2g2043 394 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 10 394 - -
Apr2g2043 394 MobiDBLite consensus disorder prediction 235 278 - -
Apr2g2043 394 Pfam Ring finger domain 37 78 IPR001841 -
Apr2g2043 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 87 IPR013083 -
Apr2g2043 394 MobiDBLite consensus disorder prediction 154 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2043 Apr-Chr2 25750965 25754937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2043 35 78 C3H Transcription Factor Family AT5G15790 50.000 6.55e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2043 K19043 - gmx:100780275 651.744