Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2029 ATGGGCAGAGGGTGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCATCCTTCACAGCCCAACAGTTCTCAACTCTTTTCCTGAAGACAACAACAACAACAAGTGGAAAGCTGGTCCCAACAACAACATGGATGGCACAGTTAGCAGAAAGAGGTCTCCATCATCCACTCCCAACACCACCATCCCCTTCCAAGTCAACCTTAGCTCTCCTCCACCCTCTCATGACATTGATGAAATGGACTTCTTCTCTCCCAACACCAACAAACACCACACCCTTCCCTCTTCATCCACCTCTGCACCTCCTTCACTTCACCACCTTCACCACCATCATCATCATGACCCCACTTCTTCTATCTTGGAATTGAAAGTAAACACTGGTCTGAATCTTCTTACCACCAACACTAGCAGTGATCAATCCATGGTGGACGATGATATGTCACCTAATTCAGAAGGTAAAAGAGCTAAGAGTGAGGTGGGTAGTCTGAGAGCTGAGATTGAGCGAATGAGAGTGGAGAATCAACAGCTGAGGAACATGCTTGATCAGATTGAGGCCAATTACAATTCCCTTCGGATGCAACTGATGAGTCTGATGCAAGAGCAGAAGGGGCAAGAACGGGGTGAAGAACAAGAAGACCAAATGTTAGAAGAGAAGAAACAAACTGGGAATGGTGGAGGCTTGGTACCAAGGCAATTTATGGATCTTGGGTTGGCTACTAATGCTGACACTGATGAACCCTCGCTCTCTTCTTCTGTGGGAAGAAGTCACGACCGGTCAAAGTCACCGGCAAAGAACGTAGAGGTTGCATCCAAGGACTTTGGCCCAAGGAAGAATGGGAATGGTAGTGATGAAGGACTTGTGTTTGATCAAGACAAGAAGGAACTTGGTAGGGGAATTGAAAGAGAGGGTAGTCCCTCGGATCAAGCCTTGGCTGTTAACAATGTTCCTAAGTTCAGTCCTCCTAGAAATGTTGATCAAGCTGAGGCCACTATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCTATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCTGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAACAATACTTATTACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTGCTTTCAGGATCAATGTCAAGTGCTGATGGACTACTGAACACAAACTTCCTCTCAAGGTCACTCTTTCCTTGCTCTTCTTCAAGCATGGCAACAATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGACTTGACTCAGTCTCCAAACCCATTACAGTTCGCAAAGCCACTCCAAATCCCCATCACTGGTGTCCCTCAGAACTATGCCAATTCACCAGGCTCATTACTGCCTCATATATTTGGTCACGTAATGTGTAATCAATCAAAGTTTTCTGGCCTTCAAATGTCTCATGATGCGGACCCTTCCCAATTGGGTAATCACTCTCAACTATCAACACCACAACTTGCTGACACAGTCGGTGCCTTTGCAGCTGATCCTAACCTCACTGCAGCTTTGGCTGCAGCTATCACTTCCGTTATTGGGGTTGCACAGCCAAACAACAGTACCAGTACTAATAATAATGCCAACACAACTACCAACACCACCAATGCCAATATTACGTCAAGCAACAATAATAGCAATGGAAAGCAATAA 1815 0.4617 MGRGCGLSIDSDPIGSFILHSPTVLNSFPEDNNNNKWKAGPNNNMDGTVSRKRSPSSTPNTTIPFQVNLSSPPPSHDIDEMDFFSPNTNKHHTLPSSSTSAPPSLHHLHHHHHHDPTSSILELKVNTGLNLLTTNTSSDQSMVDDDMSPNSEGKRAKSEVGSLRAEIERMRVENQQLRNMLDQIEANYNSLRMQLMSLMQEQKGQERGEEQEDQMLEEKKQTGNGGGLVPRQFMDLGLATNADTDEPSLSSSVGRSHDRSKSPAKNVEVASKDFGPRKNGNGSDEGLVFDQDKKELGRGIEREGSPSDQALAVNNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLLNTNFLSRSLFPCSSSSMATISASAPFPTVTLDLTQSPNPLQFAKPLQIPITGVPQNYANSPGSLLPHIFGHVMCNQSKFSGLQMSHDADPSQLGNHSQLSTPQLADTVGAFAADPNLTAALAAAITSVIGVAQPNNSTSTNNNANTTTNTTNANITSSNNNSNGKQ* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2029 604 MobiDBLite consensus disorder prediction 287 302 - -
Apr2g2029 604 Coils Coil 160 201 - -
Apr2g2029 604 MobiDBLite consensus disorder prediction 571 604 - -
Apr2g2029 604 MobiDBLite consensus disorder prediction 30 117 - -
Apr2g2029 604 MobiDBLite consensus disorder prediction 148 162 - -
Apr2g2029 604 ProSiteProfiles WRKY domain profile. 343 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr2g2029 604 MobiDBLite consensus disorder prediction 243 257 - -
Apr2g2029 604 Pfam WRKY DNA -binding domain 350 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr2g2029 604 MobiDBLite consensus disorder prediction 134 162 - -
Apr2g2029 604 MobiDBLite consensus disorder prediction 203 219 - -
Apr2g2029 604 CDD bZIP 154 186 - -
Apr2g2029 604 MobiDBLite consensus disorder prediction 30 73 - -
Apr2g2029 604 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr2g2029 604 PANTHER OS05G0567200 PROTEIN 59 591 - -
Apr2g2029 604 Gene3D WRKY domain 333 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr2g2029 604 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 59 591 IPR044810 GO:0003700
Apr2g2029 604 SMART WRKY_cls 348 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr2g2029 604 MobiDBLite consensus disorder prediction 87 104 - -
Apr2g2029 604 MobiDBLite consensus disorder prediction 200 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2029 Apr-Chr2 25631244 25634077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2029 125 567 WRKY Transcription Factor Family AT1G62300 51.641 1.40e-125 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr2g2029 WRKY 3.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2029 - - gmx:100127384 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2029 2 25631244 25634077 Apr2g2029 2 25631244 25634077 ECH
Apr2g2029 2 25631244 25634077 Apr1g1790 1 27635834 27638809 ECH
Apr2g2029 2 25631244 25634077 Apr3g1174 3 26270322 26273053 PCT