LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g2028	ATGGAGTGGACAAGAGGCACCATCATAGGACATGGGTCGTCAGCCACCGTGTACATCGCCACCTCCTCCCACTCCTCCACCGTCTCTGCAGTCAAATCGGCGGAACTATCACTTTCACACTCAGAACAGCTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCACATAGTTAGCTACAAAGGCTGTAGCATCACAAAGGAAAACAGAACTCTCTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAAATCTCTCTCAGGTGACTCGCCGGCACGGTGGCCGGCTCGATGAGCCGGCGATTGCACACTACACACAACAAGTCCTGCAGGGGATGGAGTACTTGCATGAAAATGGTATTGTGCATTGTGACATTAAGGGTAGTAACATATTGGTTGGTGAAGGTAGAGTTAAAATTGGAGACTTTGGATGTGCCAAGTTTGTGAATGAATCTCCGGCGATGATCGGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTACCCCGCTGATGTTTGGGCACTTGGGTGCACAGTGGTTGAAATGGCCACTGGGTTTGCACCATGGCCTAATGTGGAAGACCCTGTTACAGTTCTTTACCATGTTGCATATTCTGATGAGGTGCCTGAGATTCCTAGTTTTCTGTCTGAACAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGGAGGAATCCTAAGGAGAGATGGAGTTGTAGTGAATTGTTGAGGCATCCATTTCTTTTGGAATTCTGTTCCAATGGTAAGAAAATTCAAGAATCTAATAATTCAAGTTCACCAACAAGTATTCTTGAGCAGGGCTTTTGGAATTTTCTTGAAGAGGCAGAGTACCTCTCTGGCAATTTGGTTCAAAAAAGTACTGAGAATTCTGCTGCTGGTAGGATCAGAAGACTAGCTGTGTTTTCAGGGGATCCAATTTGGATATGGGATGATGAGAATTGGATCACAACTAGAGGCAATGATGCAGTGGCTTCAACTAGTGATGGGTTAGATTTGGATGCTAATGGTAGAATTAGTGGTATTTTTTGTGCGAATTATAAAAGTAGGGATGTTAATAGTGTAGGTTATAGTCTCAATTTTGAGAGAGGCATTACTGAGATGCTTCTCCCTTCAACGTTGGATTTTTTATAA	1173	0.4544	MEWTRGTIIGHGSSATVYIATSSHSSTVSAVKSAELSLSHSEQLQREQRILSSLFSPHIVSYKGCSITKENRTLWFNLFMEYMPFGNLSQVTRRHGGRLDEPAIAHYTQQVLQGMEYLHENGIVHCDIKGSNILVGEGRVKIGDFGCAKFVNESPAMIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNVEDPVTVLYHVAYSDEVPEIPSFLSEQAKDFLGKCFRRNPKERWSCSELLRHPFLLEFCSNGKKIQESNNSSSPTSILEQGFWNFLEEAEYLSGNLVQKSTENSAAGRIRRLAVFSGDPIWIWDDENWITTRGNDAVASTSDGLDLDANGRISGIFCANYKSRDVNSVGYSLNFERGITEMLLPSTLDFL*	391

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr2g2028	390	PANTHER	MAP KINASE KINASE KINASE	1	355	-	-
Apr2g2028	390	SUPERFAMILY	Protein kinase-like (PK-like)	3	259	IPR011009	-
Apr2g2028	390	ProSiteProfiles	Protein kinase domain profile.	3	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Apr2g2028	390	Gene3D	Transferase(Phosphotransferase) domain 1	78	280	-	-
Apr2g2028	390	Pfam	Protein kinase domain	5	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Apr2g2028	390	Gene3D	Phosphorylase Kinase; domain 1	1	77	-	-
Apr2g2028	390	PANTHER	CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED	1	355	-	-
Apr2g2028	390	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	123	135	IPR008271	GO:0004672\|GO:0006468
Apr2g2028	390	SMART	serkin_6	3	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Apr2g2028	390	CDD	STKc_MAPKKK	2	255	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g2028	Apr-Chr2	25618909	25620081	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr2g2028	1	303	MAP Kinase Kinase Kinase	AT2G32510	50.161	4.91e-104	310

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Apr2g2028		Pkinase	2.2e-58	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g2028	K20716		-	gmx:100797801	599.742

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Apr2g2028	2	25618909	25620081	Apr2g2028	2	25618909	25620081	ECH
Apr2g2028	2	25618909	25620081	Apr1g1788	1	27620332	27621790	ECH
Apr2g2028	2	25618909	25620081	Apr3g1173	3	26259266	26260546	PCT

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