Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2028 ATGGAGTGGACAAGAGGCACCATCATAGGACATGGGTCGTCAGCCACCGTGTACATCGCCACCTCCTCCCACTCCTCCACCGTCTCTGCAGTCAAATCGGCGGAACTATCACTTTCACACTCAGAACAGCTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCACATAGTTAGCTACAAAGGCTGTAGCATCACAAAGGAAAACAGAACTCTCTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAAATCTCTCTCAGGTGACTCGCCGGCACGGTGGCCGGCTCGATGAGCCGGCGATTGCACACTACACACAACAAGTCCTGCAGGGGATGGAGTACTTGCATGAAAATGGTATTGTGCATTGTGACATTAAGGGTAGTAACATATTGGTTGGTGAAGGTAGAGTTAAAATTGGAGACTTTGGATGTGCCAAGTTTGTGAATGAATCTCCGGCGATGATCGGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTACCCCGCTGATGTTTGGGCACTTGGGTGCACAGTGGTTGAAATGGCCACTGGGTTTGCACCATGGCCTAATGTGGAAGACCCTGTTACAGTTCTTTACCATGTTGCATATTCTGATGAGGTGCCTGAGATTCCTAGTTTTCTGTCTGAACAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGGAGGAATCCTAAGGAGAGATGGAGTTGTAGTGAATTGTTGAGGCATCCATTTCTTTTGGAATTCTGTTCCAATGGTAAGAAAATTCAAGAATCTAATAATTCAAGTTCACCAACAAGTATTCTTGAGCAGGGCTTTTGGAATTTTCTTGAAGAGGCAGAGTACCTCTCTGGCAATTTGGTTCAAAAAAGTACTGAGAATTCTGCTGCTGGTAGGATCAGAAGACTAGCTGTGTTTTCAGGGGATCCAATTTGGATATGGGATGATGAGAATTGGATCACAACTAGAGGCAATGATGCAGTGGCTTCAACTAGTGATGGGTTAGATTTGGATGCTAATGGTAGAATTAGTGGTATTTTTTGTGCGAATTATAAAAGTAGGGATGTTAATAGTGTAGGTTATAGTCTCAATTTTGAGAGAGGCATTACTGAGATGCTTCTCCCTTCAACGTTGGATTTTTTATAA 1173 0.4544 MEWTRGTIIGHGSSATVYIATSSHSSTVSAVKSAELSLSHSEQLQREQRILSSLFSPHIVSYKGCSITKENRTLWFNLFMEYMPFGNLSQVTRRHGGRLDEPAIAHYTQQVLQGMEYLHENGIVHCDIKGSNILVGEGRVKIGDFGCAKFVNESPAMIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNVEDPVTVLYHVAYSDEVPEIPSFLSEQAKDFLGKCFRRNPKERWSCSELLRHPFLLEFCSNGKKIQESNNSSSPTSILEQGFWNFLEEAEYLSGNLVQKSTENSAAGRIRRLAVFSGDPIWIWDDENWITTRGNDAVASTSDGLDLDANGRISGIFCANYKSRDVNSVGYSLNFERGITEMLLPSTLDFL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2028 390 PANTHER MAP KINASE KINASE KINASE 1 355 - -
Apr2g2028 390 SUPERFAMILY Protein kinase-like (PK-like) 3 259 IPR011009 -
Apr2g2028 390 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2028 390 Gene3D Transferase(Phosphotransferase) domain 1 78 280 - -
Apr2g2028 390 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2028 390 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Apr2g2028 390 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 355 - -
Apr2g2028 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Apr2g2028 390 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2028 390 CDD STKc_MAPKKK 2 255 - -
Apr2g2028 390 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2028 Apr-Chr2 25618909 25620081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2028 1 303 MAP Kinase Kinase Kinase AT2G32510 50.161 4.91e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr2g2028 Pkinase 2.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2028 K20716 - gmx:100797801 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2028 2 25618909 25620081 Apr2g2028 2 25618909 25620081 ECH
Apr2g2028 2 25618909 25620081 Apr1g1788 1 27620332 27621790 ECH
Apr2g2028 2 25618909 25620081 Apr3g1173 3 26259266 26260546 PCT