Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2026 ATGGAACTTCGTTCTCGTCGGCGCCTTTTCAATGCCACTGTTTCTGGGAAGGAGCAGCAGTCTAGGGACGATGTCGTGACGGAAGTTGAAAATAATGGCCTATGTGGGAACAATAAAGATAAAGATGTTTGTGCTATATCTTCTGATTTAGATTCTAATTCTGATTCGGGTTCTGATTTTGAAGATGAAGAATTTGGTGGGAAATTCCTAACTGACTTGAATGAAGAACCAACTTCAAGCATTAGTGTTTCTAGTGGTGAAGATAGCACTTCTGATTCATCTGACAGTGGCAAGCCTTCATCCAAAAGGGGAAAGGCGCAGTCCAGAAAGAAGAGAAAAAGTTTCAATTCAGAAAATGGAGAACTGGGTGATGTAAATAGAGAGGTGGAGCACAGAGATAATGATGAATACTCAATGGGTCTGCAACAATCAGTTACGTTTGTTTTGGGGGAAACAGAAAAGAAAAAAAATACAAAAAAGGCAAGAAAAAAAAACTATCGACCAGTGTTGTTGTGGAATGCATGGGAAGAGGAACAAGAACGATGGATTGATGAGAATATATCAGAAAATGTTGACTTAGATAATCAGAGTGAAGTACTGAATGAAACTGCTGAGGCATCCTCTGATCTGACCATGCCTTTACTTAGATACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGCAAGTAGAGGTGGAATACTTGCTGATGAAATGGGGATGGGGAAGACTATTCAAGCAATTGCCCTTGTCCTTTCCAAACGTGAACTCCAACAAAGGAATTTGTTGCCTGTGATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGACCGCTTTACTTCAAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCTAAGAGAGGAAGGAATGTGGAGCAGTTCTTGGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGTCCGGATACAGGAGGCATATGATGCCTCCTAAAGAGAGATGTCCGTATTGTAGAAAATTATTTTTGCAGCGCAAGTTGTTGTATCATCAGAACTATTTTTGTGGACCTCATGCTGTTAGAACAGAAAGACAATCAAAGCAAGTTAAGAAAAAGAAAAGTGAAAATACTAAAGGAAAGATCAAGGAATGTGACAATAACAAAATGTCAAAGCATTGGAGTGAAAAATTGGAAGAGGATTTTGACAAGAAAAACGACGAAATACACAAGAAAATAGAAGATTCAGATGCTGTATATAGCGATACATCACTTCTACATGCTGTCAAGTGGCATCGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTCTAACACTGCTAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCATTAAGTGGAACTCCCCTTCAGAACCGAGTAGGAGAGCTGTATTCTCTGATACGATTCCTGCGAATAACTCCTTATTCCTATTACTTATGCAAGGACTGTGATTGCAAGATTCTTGATCATAGTTCTAAAGAATGTTCGAACTGCACCCACAGTTCTGTGAGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATGCAATCGTTTGGAAATAATGATCGTGGGCAAAGAGCTATGATATTGCTTAAGCATAAAGTTTTGAAGAACATAGTGCTAAGGCGCACTAAAATAGGCAGAGCTACTGATCTTGCACTTCCACCTAGAATTGTTACATTGAGAAGGGATTGCCTGGATATTAAAGAGCAAGACTATTATGAATCATTATATAATGAAAGTCAGGCACAGTTCAATACATACGTCGAGGCTAATACTCTGATGAATAATTATGCTCATATATTTGATCTCCTCACACGGCTACGTCAGGCCGTCGATCATCCATACCTTGTGGTTTATTCTCATACTGCGGTGTTAAGAAGTGAAAATGTGATAAGTAATTCTACTGTTGAACAAGTATGTGGCATTTGCCATGAACCAGTAGAAGATCCTGTGGTTACCTCTTGTGAGCATATATTTTGCAAGACATGCTTGTTAGACTTCTCTGCTTCCTTGGGACAAGTGTCATGCCCTTCTTGCTGTAAATTACTTACAGTTGATTTAACATCCAACAAGGAAGTTGGGGATCATGCTAATAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCGGCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGGGATGGTTCTGCCAAAGGAATTGTTTTTAGTCAGTTCACATCATTCTTGGATCTCATAAACTACTCTTTGCACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAGGTTCACCAATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGAGGTGTTGCACTCAATTTGACAGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCGGTGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAATTGTGAGGTTTGTTATTGAGAACACAATCGAGGAGAGAATTTTGAAACTGCAAGAGAAGAAGGAATTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGACGCTTTGGGGAAATTGACGGAGGCAGACTTGAGATTTTTATTTGTTACCTAA 2751 0.3966 MELRSRRRLFNATVSGKEQQSRDDVVTEVENNGLCGNNKDKDVCAISSDLDSNSDSGSDFEDEEFGGKFLTDLNEEPTSSISVSSGEDSTSDSSDSGKPSSKRGKAQSRKKRKSFNSENGELGDVNREVEHRDNDEYSMGLQQSVTFVLGETEKKKNTKKARKKNYRPVLLWNAWEEEQERWIDENISENVDLDNQSEVLNETAEASSDLTMPLLRYQKEWLAWALKQENSASRGGILADEMGMGKTIQAIALVLSKRELQQRNLLPVIKGTLVICPVVAVTQWVSEIDRFTSKGSTKVLVYHGAKRGRNVEQFLDYDFVITTYSVVESGYRRHMMPPKERCPYCRKLFLQRKLLYHQNYFCGPHAVRTERQSKQVKKKKSENTKGKIKECDNNKMSKHWSEKLEEDFDKKNDEIHKKIEDSDAVYSDTSLLHAVKWHRIILDEAHYIKSRHSNTAKAVLALESSYKWALSGTPLQNRVGELYSLIRFLRITPYSYYLCKDCDCKILDHSSKECSNCTHSSVRHFCWWNKYVATPMQSFGNNDRGQRAMILLKHKVLKNIVLRRTKIGRATDLALPPRIVTLRRDCLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSHTAVLRSENVISNSTVEQVCGICHEPVEDPVVTSCEHIFCKTCLLDFSASLGQVSCPSCCKLLTVDLTSNKEVGDHANKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMIERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTNDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2026 916 SMART ultradead3 210 510 IPR014001 -
Apr2g2026 916 SMART helicmild6 777 860 IPR001650 -
Apr2g2026 916 ProSitePatterns Zinc finger RING-type signature. 677 686 IPR017907 -
Apr2g2026 916 SMART ring_2 662 701 IPR001841 -
Apr2g2026 916 CDD SF2_C_SNF 744 871 - -
Apr2g2026 916 CDD DEXDc_SHPRH-like 214 564 - -
Apr2g2026 916 Gene3D - 216 341 IPR038718 -
Apr2g2026 916 PANTHER BNAA08G28190D PROTEIN 154 913 - -
Apr2g2026 916 Coils Coil 401 421 - -
Apr2g2026 916 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 492 IPR014001 -
Apr2g2026 916 Pfam Helicase conserved C-terminal domain 746 860 IPR001650 -
Apr2g2026 916 Pfam SNF2-related domain 228 639 IPR000330 GO:0005524|GO:0140658
Apr2g2026 916 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 728 IPR013083 -
Apr2g2026 916 Gene3D - 584 914 IPR027417 -
Apr2g2026 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 914 IPR027417 -
Apr2g2026 916 MobiDBLite consensus disorder prediction 111 129 - -
Apr2g2026 916 SUPERFAMILY RING/U-box 652 705 - -
Apr2g2026 916 MobiDBLite consensus disorder prediction 1 129 - -
Apr2g2026 916 Pfam RING-type zinc-finger 662 699 IPR027370 -
Apr2g2026 916 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 154 913 - -
Apr2g2026 916 Gene3D - 369 583 IPR038718 -
Apr2g2026 916 MobiDBLite consensus disorder prediction 73 101 - -
Apr2g2026 916 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 742 906 IPR001650 -
Apr2g2026 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 564 IPR027417 -
Apr2g2026 916 ProSiteProfiles Zinc finger RING-type profile. 662 701 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2026 Apr-Chr2 25605032 25613412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2026 149 916 RAD5 or RAD16-like Gene Family AT1G05120 67.487 0.0 1092
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr2g2026 SNF2_N 1.4e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2026 K15083 - gmx:100798333 1399.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2026 2 25605032 25613412 Apr2g2026 2 25605032 25613412 ECH