Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2023 ATGGCTAGAACAATCTCAAACAACAGCAACAACGATGAAGCTGTCACAGAGGTTGACACCAACGGATCAAAAGATGAGAGTGAAGCAAGAGGTCATTTGAAGAAGGGGCCATGGACCCCAGCAGAAGATGCTGTCTTGGTAGAGTACGTGAAGAAGTATGGTGAAGGAAATTGGAACTCTGTGCAAAAGAATTCTGGGTTGTTAAGGTGTGGCAAAAGTTGTAGACTTAGATGGGCCAATCATCTAAGGCCTAATTTGAAGAAAGGTGCATTTTCTCATGAAGAAGAACAAATCATCGTCGACCTTCATGCTAAGCTTGGAAACAAATGGGCTCGAATGGCTGCACAGTTACCTGGTAGGACCGATAATGAAATAAAGAACTTTTGGAATACCAGAATGAAAAGGCGCCAGAGAGCAGGGTTACCCCTTTATCCCCCAGAAGTCCATGCAGAAGCCACTGCATACCATCTACAACAACAACAACACTACTTGGAGCAACAACCATACCCTTCTAATTCATCTTCATCATTTTCTTTACTCTTATCCTCTTGTTACCCCAAGAAGCTCAATGAACCAAACCAAAACCATTATTCTAATGCAAATCCTATGCAAAACCAGCCTGATTCTGCAAATTGTTATACCAATCCAAGCCAGAAATTTAAGTTTTCCAATGAAAATCGTGCAAATGTAAATCTTGCTTTGCCATTATCCCCGGTTTCTCCGTATAGATCCTCATCCTCTACCCTTTTCAACCAGAGTTTTGCTCCTCCTAGTTGTTCTGCCGCAACTGATTCACGTGATTACCAAAGCTATGGTGATCATGGCTTCATAGCAGGATCTCCATATGATCCAATTCCTTTGGTGCCAAGCTCAACCACTGAGATATCTTCAAGCCAAACCGCAACACCAGCTTCATCTTATGCAAGTGGTGTTGTTGATGGCTTGATGGGACCTTCAAGCATGGTTAATAATGACTACTATGAAGTTGCACCATTATCTCCTCAAGGAAACAGTGGCTTGTTGGACGCTCTAGTGATGGAAGCTCATGGACTTTCTCGCAATGACAAGTTCAATGGTGAGGATTCAATCTTAGCTGAGAAGTTATCTCATAAGAGGAAAAGCATGGCTGGTGATCAGGAATATGTAGAAGTGGGAGGCACTGAGCCTGTGGTGTCAACCATGAAGAAGAGCAATGGCAACACAAGTAATGAAGCCCAAAGGAATGATTTTAGCTCTTCCGAATTGTCAAAAGGGGAGAAACTGATTGGTGAAGATCCATTGGAAGAACTGAATTCGATGGATGATGATTTGTTTAGCCTGCTGAACCATTTTCCTTCAGAAATGCCAATGCCTGAGTGGTACCGTAAAGAGGAAAGTCAGTCATTGGGACTTGAAACTCAACCCGATGCTTCATCACCTGGCCCCACTAATCAAGAATTTGCTTGGACTCTTGGAACTTGCTGGAAGAACATGCCAGGCATATGCTAA 1488 0.4301 MARTISNNSNNDEAVTEVDTNGSKDESEARGHLKKGPWTPAEDAVLVEYVKKYGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSHEEEQIIVDLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVHAEATAYHLQQQQHYLEQQPYPSNSSSSFSLLLSSCYPKKLNEPNQNHYSNANPMQNQPDSANCYTNPSQKFKFSNENRANVNLALPLSPVSPYRSSSSTLFNQSFAPPSCSAATDSRDYQSYGDHGFIAGSPYDPIPLVPSSTTEISSSQTATPASSYASGVVDGLMGPSSMVNNDYYEVAPLSPQGNSGLLDALVMEAHGLSRNDKFNGEDSILAEKLSHKRKSMAGDQEYVEVGGTEPVVSTMKKSNGNTSNEAQRNDFSSSELSKGEKLIGEDPLEELNSMDDDLFSLLNHFPSEMPMPEWYRKEESQSLGLETQPDASSPGPTNQEFAWTLGTCWKNMPGIC* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2023 495 MobiDBLite consensus disorder prediction 392 419 - -
Apr2g2023 495 MobiDBLite consensus disorder prediction 1 37 - -
Apr2g2023 495 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 465 - -
Apr2g2023 495 MobiDBLite consensus disorder prediction 460 478 - -
Apr2g2023 495 MobiDBLite consensus disorder prediction 392 412 - -
Apr2g2023 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Apr2g2023 495 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Apr2g2023 495 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Apr2g2023 495 MobiDBLite consensus disorder prediction 455 478 - -
Apr2g2023 495 SMART sant 87 135 IPR001005 -
Apr2g2023 495 SMART sant 34 84 IPR001005 -
Apr2g2023 495 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Apr2g2023 495 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Apr2g2023 495 Gene3D - 90 136 - -
Apr2g2023 495 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Apr2g2023 495 MobiDBLite consensus disorder prediction 1 17 - -
Apr2g2023 495 MobiDBLite consensus disorder prediction 18 37 - -
Apr2g2023 495 CDD SANT 37 82 IPR001005 -
Apr2g2023 495 CDD SANT 90 131 IPR001005 -
Apr2g2023 495 Gene3D - 34 87 - -
Apr2g2023 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2023 Apr-Chr2 25568412 25570518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2023 29 495 MYB Transcription Factor Family AT2G32460 39.080 5.19e-80 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g2023 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2023 K09422 - gmx:100784779 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2023 2 25568412 25570518 Apr2g2023 2 25568412 25570518 ECH