Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2014 ATGGTGAAAAGTTTGGTGGGTGGCTTGAAATTGGAGTCAAGTATGAAGCAGCTTATGATTTTGCACCTTGTAACATGGAGTTGGGTATTCCTCCTTTGTGGTATTGCTCACAGCCAAAGGCCTGCCAGTGTGAACATTGGTGCTGTTTTTGCTTTCGATTCGGTCATAGGTAGAGCTGCCGAGGTTGCTATGGAAATGGCTGTTTCTGATGTGAATGCAGACCCCAGAGTTCTCAAGGGAACCAAACTCAACTTGATCAAGAGGGATGCCATGTGCAACGCTTTTCTAGGATCCATTGGAGCTTTTCAAGTACTTGAGAAAGGGGTTGCAGCTATAATTGGTCCACAGTCGTCTACTGTAGCTCATACGGTTTCTCAAATTGTTGATGCTCTCCAAGTTCCTCTTATTTCATATGCTGCCACTGATCCAACCCTGTCTTCCCTCCAATTTCCTTTCTTCTTTCGTACCACACAAAGTGACTTAGAGCAAATGACTGCAATGGCTGATCTAATTGACTATAATGGATGGAAAGAGGTCATTGCTGTATACTTAGACGATGATTATGGAAGAAATGGAATATCTGCTTTGATTGACCAACTTGACAAAAGGAGGTTAAAAATTTCACATAAACTTCCTTTGAGTATTCAGTTTGATCTGGATAAAATCACTAGCTTGCTCAATCAATCCAAATTGTTTGGACCTCGTGTTTATGTTGTTCATGTCAACCCTGATCCTAGACTGAGAATATTTTCCATTGCTCATAAGCTTCAAATGATGGCTGATAATTATGTCTGGCTTGTCACAGATTGGCTTGCTACTACACTAGAATCGTTATCCCCGGTGAATCAGACCACTTTTGATGTTCTCCAAGGGGTAGTTGGTCTTCGGCAACACATTTCAGATTCAAGAAAAAAAAGAGCTTTTGTTTCTCGATGGATAAAAATGAAGAAAGAAGGAACTGGCATTCAGCTTGACAAGCTCAAAGTCTTTGTTGGTGGATCTGATCTGGTCAACATATTATTACGATCAAATTTTACTGGTGTGAGTGGTCAACTTCAGTTTAATTCAAACAGAAATATTGTAAGCGGTGGCTATGATGTTATCAATATCAATCAGATGGCAATTACTAGGGTTGGTTATTGGTCTAATTATTCAGGATTTTCAGTTGTACCCCCTAAAGTTCTCACAGAAAAGGAACATAACAAGTTTTCTCAAGATCAGAAGCTTGGAAATATTAATTGGCCTGGTGGAAAGACAGAAAGACCACGTGGTTGGGTGATTGCTGATAATACCAAGCCACTGAGAATTGGAGTGCCAAAGAGGGCAAGTTTTGTTGAATTCGTAACTGAATTGCAAGGTAGTAATCAAATTCAGGGGTACTGCATTGATGTCTTCAAGAAAGCCCTTGCGTTTATCCCATATGAAGTTCCTTATGTATTCAAGTCTGTTGGGAATGGTAAAGAAAATCCCAATTATGATGCACTTGTGCAAATGATTGCTGAAAATGTACTTGATGCTGCTGTTGGAGACATTGCAATTGTGACAAACCGTACAATGATTGTGGATTTTTCTCAGCCTTTTGCATCATCTAACCTTGTTATAGTGGCTGCTATCAACAATGCAAAAACGGATAGTTGGGTGTTCCTCAAACCATTTACAGCAGATATGTGGTGTGTCACTGCTGCATCATTCTTGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAATAAATGATGACTTCCGTGGTCCTCCCAAGAGGCAACTTGTGACCATGCTTATGTTCAGCCTCTCAACACTGTTTAAAACAAATCAGGAGAAGACAGTAAGCTCACTTTCTAAAATGGTGATGATAGTGTGGCTTTTTCTATTGATGGTGATCACAGCTAGCTATACAGCGAGCTTGACCTCAATTCTTACAGTGGAGCAGCTTTCATCACCCATCACAGGAATCGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGATCATTTGCTTACAGCTATCTGATAGATAATCTTTATGTACAAAGATCAAGACTTGTTTCCCTAGGCTCCCCTGAGGAATATGCTATAGCCCTGCAGAAGGGACCACATGGTGGAGGGGTGGCAGCTATCATTGATGAGCTTCCATATGTGGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATTATTGGACAGCCATTCGCCAGAGGCAGTTGGGGATTTGCTTTTCAAAGAGACTCTCCTCTTGCCTTTGACATGTCTACCGCAATTTTGAAACTCTCCGAGAATGGAGAGCTTCGAAAGATACATCACAAGTGGTTCTGTAAAATGGGTTGTCCTGAAGAAAGGAAAAGCAACTCTAAGCCTGACCAACTTCACTTGGTTAGCTTTTGGGGTCTATATCTCTCATGTGGCATTGTCTCTCTCGTTGCAATGGTGGTGTTTCTGCTACGAATGATTTGCCAATATGCTCGCTTCAAACAAAGACAAAAGGATATTGCTGCTTCATCCTCAGAACCATCATCAAGCACTCCTTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATAAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCAATGTGACAATGTTCACAACACCAACTGA 2637 0.4088 MVKSLVGGLKLESSMKQLMILHLVTWSWVFLLCGIAHSQRPASVNIGAVFAFDSVIGRAAEVAMEMAVSDVNADPRVLKGTKLNLIKRDAMCNAFLGSIGAFQVLEKGVAAIIGPQSSTVAHTVSQIVDALQVPLISYAATDPTLSSLQFPFFFRTTQSDLEQMTAMADLIDYNGWKEVIAVYLDDDYGRNGISALIDQLDKRRLKISHKLPLSIQFDLDKITSLLNQSKLFGPRVYVVHVNPDPRLRIFSIAHKLQMMADNYVWLVTDWLATTLESLSPVNQTTFDVLQGVVGLRQHISDSRKKRAFVSRWIKMKKEGTGIQLDKLKVFVGGSDLVNILLRSNFTGVSGQLQFNSNRNIVSGGYDVININQMAITRVGYWSNYSGFSVVPPKVLTEKEHNKFSQDQKLGNINWPGGKTERPRGWVIADNTKPLRIGVPKRASFVEFVTELQGSNQIQGYCIDVFKKALAFIPYEVPYVFKSVGNGKENPNYDALVQMIAENVLDAAVGDIAIVTNRTMIVDFSQPFASSNLVIVAAINNAKTDSWVFLKPFTADMWCVTAASFLMIGVVIWILEHRINDDFRGPPKRQLVTMLMFSLSTLFKTNQEKTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLIDNLYVQRSRLVSLGSPEEYAIALQKGPHGGGVAAIIDELPYVELFLSKETDFGIIGQPFARGSWGFAFQRDSPLAFDMSTAILKLSENGELRKIHHKWFCKMGCPEERKSNSKPDQLHLVSFWGLYLSCGIVSLVAMVVFLLRMICQYARFKQRQKDIAASSSEPSSSTPCSQVVVNFFNFIDKKEEAIKKMFTQCDNVHNTN* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2014 878 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 57 73 - -
Apr2g2014 878 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 117 145 - -
Apr2g2014 878 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 248 271 - -
Apr2g2014 878 Gene3D - 37 165 - -
Apr2g2014 878 Gene3D - 707 739 - -
Apr2g2014 878 SUPERFAMILY Periplasmic binding protein-like I 38 426 IPR028082 -
Apr2g2014 878 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 320 876 - -
Apr2g2014 878 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 320 - -
Apr2g2014 878 Gene3D - 166 319 - -
Apr2g2014 878 PANTHER GLUTAMATE RECEPTOR 3.7 320 876 - -
Apr2g2014 878 PANTHER GLUTAMATE RECEPTOR 3.7 28 320 - -
Apr2g2014 878 Pfam Ligand-gated ion channel 775 806 IPR001320 GO:0015276|GO:0016020
Apr2g2014 878 PIRSF IGluLR_plant 13 321 IPR017103 -
Apr2g2014 878 PIRSF IGluLR_plant 313 878 IPR017103 -
Apr2g2014 878 Pfam Receptor family ligand binding region 61 313 IPR001828 -
Apr2g2014 878 CDD GluR_Plant 432 774 - -
Apr2g2014 878 Pfam Bacterial extracellular solute-binding proteins, family 3 435 774 IPR001638 -
Apr2g2014 878 SMART GluR_14 433 776 IPR001320 GO:0015276|GO:0016020
Apr2g2014 878 Gene3D - 323 432 - -
Apr2g2014 878 Gene3D - 740 774 - -
Apr2g2014 878 SUPERFAMILY Periplasmic binding protein-like II 414 774 - -
Apr2g2014 878 Gene3D - 546 675 - -
Apr2g2014 878 Gene3D - 433 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2014 Apr-Chr2 25477930 25483059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2014 39 876 Ion Channels AT2G32400 55.215 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2014 K05387 - gmx:100784247 1428.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2014 2 25477930 25483059 Apr2g2014 2 25477930 25483059 ECH
Apr3g1152 3 26071683 26076931 Apr2g2014 2 25477930 25483059 PCT