Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2013 ATGGAGGAGTTTTGGGTCACAAGGTATGGAAGAATGGTTGTGGGCAGGGCTTTGTTACTCTTAGTTTTGTGCTTGTGGATTCCCACACAGGTGATGGGAAGAACAGGAACTACGTCCACAAACTCTACTACTTCTTCTAGGCCAACTGTTTTGAGAATTGGAGTTCTGTTTACTGTTAATTCTATAATTGGAAGATCGGCTAAACCTGCAGTTTTTGCTGCCATCAATGATATCAATGCTAATTCGAGCATTCTCCCTGGCATTAAACTGGAAATTATCCTACAAGACACGAATTGCAGTGGGTTTGTTGGAACAATGGACGCTTTGCAGTTGATGGAGAATGAAGTGGTTGCTGCTGTTGGTCCACAGTCCTCCGGAATAGCCCATGTTATCTCTCATGTTGTGAGTGAACTCCATGTACCTCTTGTTTCATTTGGAGCAACAGACCCATCACTATCATCTCTACAGTACCCATATTTTGTCCGCAGCACCCAAAGTGACTATTATCAAATGTATGCAATAGCAGACTTGGTTGATTACTATAGATGGAGGGAGGTGATAGCCATTTTTGTAGATGATGATAATGGAAGGAATGGAATTTCAGTACTGGGAGATGCTTTAGCAAAGAAACGTGCTAGGATCTCTTACAAGGCTGCATTCGCTCCTGGATCCCCCAAGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAATCAAGGGTCTATGTTCTGCATGTTAATCCTGACACTGGTTTGTCAATTTTTTCTCTTGCTAAGAAGCTAGGAATGATGACCAGTGGCTATGTGTGGATTGCAACAGATTGGCTTGCTTCAGTGTTGGATTCATTGGAGCCAGTTGATCCTAACACAATGAATCTCTTACAAGGGGTTTTGGCTTTACGCCATCACACTCCTGATACTAATGAAAAGAAGAGTTTTCTCTCTAGGTTGAAGAACCTTAAAGACAAGGAAACTCCAAGCTTCAATTCTTATGCATTGTATGCATATGACTCCATTTGGTTAGTAGCTCATGCTCTTGATGCTTTCCTCAAAGAAGGTAGAAAAATATCTTTCTCTTTTGATCCTTTGTTGCGTGACACAAATGGAAGCATGTTGCATTTGTCATCACTTCGGATTTTTGATGATGGGCCTTCGTTTCTCCAGAAAATTTTGAGGGTTAACTTTACTGGTTTGACTGGTGAAGTTCAGTTTGATACAGAAAGGAATAGACTTCGTCCAGCATATGATATCTTGAATATTGGTGGATCTGGATCAAGGAGAATTGGTTATTGGTCTAATTACTCTGGTCTCTCAGTTGTGGTTCCAGAAATTTTATATAAGAAACCACCAAACACTTCAACAAGCAATCAACAACTGTATGGTGTTATATGGCCTGGTGAAACTGCAGTTAAACCAAAAGGGTGGGTATTTCCCAACAATGGAAAGCCACTGAGAATAGCAGTGCCTAACCGGGTAGGCTACAAGGAATTTGTTTCTAAAGACAAGGACCCCCCTGGAGTAAAGGGATATTGCATTGATGTCTTTGAAGCTGCCATAAACTTGTTACCTTATCCTGTGCCGCGACAATATATATTATTTGGAAATGGTGTGAGAAATCCCAGCTATGATGACCTTGCAAATCAGGTTGCACTAAATAACTATGATGCAGCAGTAGGGGATATTACAATTGTCCCAAACAGGACAAGGGTTTTGGATTTTACTCAACCTTTCATGGAATCAGGGTTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCATTCACTACTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATTTTTGTGGGAACAGTTGTATGGATTCTTGAGCACCGGCACAACCCGGAGTTTCGTGGTAAACCGAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGGAGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAATTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAGGCACTCAACCAATTGGAATTCAAGACGGGTCATTTGCAAGGAAGTACTTGACAGAGGAACTCAATATACAACCATCTAGAATAGTTACATTGAAAAATATGGATGCATATATTGATGCACTTCAGCGTGGACCAAAAGAAGGAGGGGTTGTGGCTGTTGTTGATGAGCTTCCTTATATTGAGATCCTAATGTCAAGTACTGATTGTAAGTTTAGAACCGTTGGGCAGGAGTTCACCAAAAGTGGTTGGGGATTCGCATTCCAAAGGGACTCTCCCCTTGCTGTTGACATGTCAACTGCCATTCTTCAACTATCTGAGAATGGTGATCTGCAAAAGATTCATGACAAATGGCTTTTAAAACATGATTGTACGGCAGAAGATAATGTTGACTCAAATAAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTATCCTTGCTTTAATTGCATTTTTCGTTAGAGTGTTGTGTCAATATAACAAATTCAGCCCAGAAACTGTGGAAACTGACGAAGAAATTCAACAAGTAAGGCCAAGAAGGGCTTTCAGAGCTACAACTAGCTTCAAGGACTTGATTGTTTTTGTGGATAAGAAAGAGAAAGAAATCAAAGAGATACTCAAACAGAAGAGTAAGAAAAGGAGACGTAGCATGAGCTCAGCCTCAGATGGACAATCTAGTTCATCCACCTAA 2835 0.4071 MEEFWVTRYGRMVVGRALLLLVLCLWIPTQVMGRTGTTSTNSTTSSRPTVLRIGVLFTVNSIIGRSAKPAVFAAINDINANSSILPGIKLEIILQDTNCSGFVGTMDALQLMENEVVAAVGPQSSGIAHVISHVVSELHVPLVSFGATDPSLSSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREVIAIFVDDDNGRNGISVLGDALAKKRARISYKAAFAPGSPKKDISDLLNGVNLMESRVYVLHVNPDTGLSIFSLAKKLGMMTSGYVWIATDWLASVLDSLEPVDPNTMNLLQGVLALRHHTPDTNEKKSFLSRLKNLKDKETPSFNSYALYAYDSIWLVAHALDAFLKEGRKISFSFDPLLRDTNGSMLHLSSLRIFDDGPSFLQKILRVNFTGLTGEVQFDTERNRLRPAYDILNIGGSGSRRIGYWSNYSGLSVVVPEILYKKPPNTSTSNQQLYGVIWPGETAVKPKGWVFPNNGKPLRIAVPNRVGYKEFVSKDKDPPGVKGYCIDVFEAAINLLPYPVPRQYILFGNGVRNPSYDDLANQVALNNYDAAVGDITIVPNRTRVLDFTQPFMESGLVVVVPVKEIKSSPWSFLKPFTTQMWCVTGAFFIFVGTVVWILEHRHNPEFRGKPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARKYLTEELNIQPSRIVTLKNMDAYIDALQRGPKEGGVVAVVDELPYIEILMSSTDCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKHDCTAEDNVDSNKLSLSSFWGLFLICGIACILALIAFFVRVLCQYNKFSPETVETDEEIQQVRPRRAFRATTSFKDLIVFVDKKEKEIKEILKQKSKKRRRSMSSASDGQSSSST* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2013 944 SUPERFAMILY Periplasmic binding protein-like II 462 828 - -
Apr2g2013 944 Coils Coil 910 930 - -
Apr2g2013 944 CDD PBP1_GABAb_receptor_plant 52 442 IPR044440 -
Apr2g2013 944 CDD GluR_Plant 484 827 - -
Apr2g2013 944 Gene3D - 71 414 - -
Apr2g2013 944 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 64 80 - -
Apr2g2013 944 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 124 152 - -
Apr2g2013 944 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 337 349 - -
Apr2g2013 944 PANTHER GLUTAMATE RECEPTOR 3.4 39 925 - -
Apr2g2013 944 SMART GluR_14 487 829 IPR001320 GO:0015276|GO:0016020
Apr2g2013 944 Gene3D - 481 596 - -
Apr2g2013 944 Pfam Receptor family ligand binding region 68 423 IPR001828 -
Apr2g2013 944 SUPERFAMILY Periplasmic binding protein-like I 45 478 IPR028082 -
Apr2g2013 944 Gene3D - 721 830 - -
Apr2g2013 944 PIRSF IGluLR_plant 12 944 IPR017103 -
Apr2g2013 944 Pfam Ligand-gated ion channel 829 859 IPR001320 GO:0015276|GO:0016020
Apr2g2013 944 Gene3D - 166 439 - -
Apr2g2013 944 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 925 - -
Apr2g2013 944 Gene3D - 597 720 - -
Apr2g2013 944 MobiDBLite consensus disorder prediction 922 944 - -
Apr2g2013 944 Pfam Bacterial extracellular solute-binding proteins, family 3 541 828 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2013 Apr-Chr2 25467669 25473426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2013 47 794 Ion Channels AT1G05200 69.118 0.0 1124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2013 K05387 - gmx:100799912 1560.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2013 2 25467669 25473426 Apr2g2013 2 25467669 25473426 ECH
Apr2g2013 2 25467669 25473426 Apr3g1152 3 26071683 26076931 PCT