Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2011 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCTTCGATGATTGGAAGAAACGGAAACGTTGGTGGCTTTGGATTATCTTCTGGGCTCTCTCTTGGCCAGGTCAATATGTTCCAGCCAAATTTGATGGAAGCTGGTCAGCTCCACCCACTGGATATGCCTCAGAACACTTCAGAGAGCGATGTCCCAAGAATTCGTGAAGATGACTTTGACACTGCCACTAAGTCCGGTAGTGAAAACCAAGAAGGTGCCTCCGGAGAAGACCAAGACCCTCGTCCCAAGAAGAAGCGCTACCATCGCCACACACAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGTCCGCATCCTGATGACAAGCAAAGGAAGGAGCTGAGTCGAGAGTTAGGATTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAATAAACGCACTCAGATGAAGACCCAACATGAGCGCCATGAGAACACACAGCTTAGAAGTGAAAATGAGAAGCTTCGAGCAGATAACATGAGGTTCAGAGAAGCTCTCAGCAATGCCTCGTGTCCTAATTGTGGTGGACCTACCGCTATAGGAGAAATGTCATTTGATGAGCATCACTTAAGGCTCGAAAATGCCCGTCTAAGAGAAGAGATTGATAGGATTTCTGCAATTGCTGCCAAGTATGTGGGAAAGCCTGTGGTAAGCTATCCACTTCTTTCCCCTTCATCTGTTCCTCCGCGTCCACTAGAACTTGGCATTGGTGGTTTTGGAGGCCAACCAGGCATTGGTGGAGGAGATATATATGGTGGTGCTGGAGATCTTCTTAGACCAGTCAGTGGACCCACCGAAGCTGATAAACCAATCATAATAGAACTCGCTGTTGCAGCTATGGAGGAACTCATTGGAATGGCACAAATGGGTGAGCCTCTTTGGTTGACTACCCTTGATGGCACCACCACTTTGCTCAACGAGGAAGAGTACATTAGGTCCTTTCCTCGAGGGATTGGCCCAAAACCTGCGGGTTTTAAGTGTGAAGCTTCACGAGAAACTGCTGTTGTTATCATGAACCATATTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTTTCTGGAATCGTCTCAAGAGCAATGACTCTGGAAGTGCTTTCAACTGGGGTGGCGGGGAACTACAATGGTGCATTGCAAGTGATGACTGCTGAATTACAAGTACCTTCACCTCTTGTGCCAACTCGAGAGAGCTATTTCGTGAGATATTGTAAGCAACACGGAGAGGGGACTTGGGCAGTAGTGGACGTTTCCTTGGATAATTTGCGCCCTAGTCCTTCTGCGAGATGCAGAAGAAGGCCTTCTGGTTGCTTAATTCAGGAAATGCCTAATGGCTACTCTAAGGTCATATGGGTTGAAAATGTAGAAGTGGATGACAGAGGTGTTCATAATCTATACAAACAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATCGCAACCTTAGATCGACAATGTGAAAGGCTAGCCAGTGCCATGGCAACGAACGTTCCCACCGTAGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTAAAACTGGCTGAAAGAATGGTTATAAGCTTTTGCGCTGGAGTGAGTGCTTCAACTGCTCACACATGGACAACACTTTCTGGAACTGGGGCTGATGATGTAAGGGTTATGACCCGTAAGAGTGTAGATGACCCAGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCAACTTCATTTTGGCTTCCAGTGTCACCCAAAAGAGTTTTTGAATTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCTAACGGCGGAGTTGTCCAAGAAATGGCACATATTGCCAATGGGCGAGATACGGGAAATTGTGTCTCTCTACTTCGGGTGAATAGTGCCAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCACCGACACAACGGGCTCATTTGTTATATATGCTCCTGTGGATATTGTGGCAATGAACGTGGTTCTCAATGGAGGGGACCCAGATTATGTAGCTCTTCTTCCTTCAGGGTTTGCTATACTCCCAGATGGGACCACTACGCATGGAGGGGGAATTGGTGACACTGGACATGGTGGATCTCTCTTGACTGTTGCATTTCAAATATTAGTTGACTCAGTTCCAACCGCTAAGCTTTCTCTTGGATCTGTTGCTACTGTTAACAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTTCTTTGTCTGGTGAAGTTGCTTGA 2304 0.4648 MPAGIMIPARNMPSMIGRNGNVGGFGLSSGLSLGQVNMFQPNLMEAGQLHPLDMPQNTSESDVPRIREDDFDTATKSGSENQEGASGEDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGFGGQPGIGGGDIYGGAGDLLRPVSGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTTLLNEEEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHINLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVENVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNVPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTHGGGIGDTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2011 767 SMART START_1 288 508 IPR002913 GO:0008289
Apr2g2011 767 SUPERFAMILY Bet v1-like 279 510 - -
Apr2g2011 767 SUPERFAMILY Homeodomain-like 85 153 IPR009057 -
Apr2g2011 767 ProSiteProfiles START domain profile. 279 511 IPR002913 GO:0008289
Apr2g2011 767 Coils Coil 159 179 - -
Apr2g2011 767 CDD START_ArGLABRA2_like 283 507 - -
Apr2g2011 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 51 764 IPR042160 -
Apr2g2011 767 MobiDBLite consensus disorder prediction 72 104 - -
Apr2g2011 767 Gene3D - 81 170 - -
Apr2g2011 767 SMART HOX_1 94 157 IPR001356 GO:0003677
Apr2g2011 767 Pfam START domain 289 508 IPR002913 GO:0008289
Apr2g2011 767 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Apr2g2011 767 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 51 764 - -
Apr2g2011 767 Gene3D - 343 505 IPR023393 -
Apr2g2011 767 CDD homeodomain 96 154 IPR001356 GO:0003677
Apr2g2011 767 SUPERFAMILY Bet v1-like 528 759 - -
Apr2g2011 767 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Apr2g2011 767 Pfam Homeodomain 96 151 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2011 Apr-Chr2 25452765 25460208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2011 38 767 Homeobox Transcription Factor Family AT1G05230 78.426 0.0 1161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr2g2011 START 1.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2011 K09338 - gmx:100809556 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2011 2 25452765 25460208 Apr2g2011 2 25452765 25460208 ECH
Apr2g2011 2 25452765 25460208 Apr3g1149 3 26047950 26055275 PCT