Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2006 ATGAACGACCTTCTCACTGATTCGTTTGTTGGTGAGGCTAATAATGGCCAGCCTTCTAGACAAAGTGATATTGAAATGGGACAGGTTCCCAGAAGCAACTCTGATATGGGAATGGATGCTTTTAATAAGCAGATCCAAGAGGCTGATAAACAAATCGATAAGCTGTTTGGGCTGCTTCAAAAGCTAAAGGAAGCTAACGAGGAATCAAAATCTGTTACAAAAGCATCAGCCATGAAAGCAATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCTCATGGTGTCAAAACAAGAATAGAAGCTATAAGCAGAGATAACCTATCCAATAGGCAAAAGCCTGGCTGTGAGAAGGGAACAGGTATTGACAGAGCAAGGATGAATATGACTAATGCCTTGGCTAAAAAATTCAAGGATCATATGACAGAGTTTCAGACCCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTTACGGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAATAGTGAGCAAATCTTCCAGAAAGCAATTCTAGAAGCAGGCAGAGGACAGGTTGTTAACACAGTAGAAGAAATTCAGGAGAGACACGATGCTGTGAAAGAAATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGGGAAATTTTAGATAACATTGAAAGTCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACATCTGCACTTCAAAATGCTAAGAAACTCCAGAAGAACTCTCGAAAATGGATGTGCATTGCCATCATTATACTGTTGCTAATAGTAGCCATCATAGTTGTGGGTGTTGTCCAACCTTGGAAGAGTAGCAAAGGCGCTTGA 930 0.4032 MNDLLTDSFVGEANNGQPSRQSDIEMGQVPRSNSDMGMDAFNKQIQEADKQIDKLFGLLQKLKEANEESKSVTKASAMKAIKKRMEKDIDEVGKIAHGVKTRIEAISRDNLSNRQKPGCEKGTGIDRARMNMTNALAKKFKDHMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQNAKKLQKNSRKWMCIAIIILLLIVAIIVVGVVQPWKSSKGA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2006 309 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Apr2g2006 309 Pfam SNARE domain 244 296 IPR000727 -
Apr2g2006 309 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Apr2g2006 309 CDD SynN 38 195 IPR006011 GO:0016020
Apr2g2006 309 SMART SynN_4 33 159 IPR006011 GO:0016020
Apr2g2006 309 MobiDBLite consensus disorder prediction 1 37 - -
Apr2g2006 309 Gene3D - 33 162 - -
Apr2g2006 309 Gene3D - 201 301 - -
Apr2g2006 309 Coils Coil 45 68 - -
Apr2g2006 309 PANTHER SYNTAXIN 10 300 IPR045242 -
Apr2g2006 309 SMART tSNARE_6 203 270 IPR000727 -
Apr2g2006 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Apr2g2006 309 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 300 - -
Apr2g2006 309 CDD SNARE_syntaxin1-like 207 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2006 Apr-Chr2 25402335 25406110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2006 1 309 SNARE and Associated Proteins AT3G03800 61.489 1.70e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2006 K08486 - gmx:100800991 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2006 2 25402335 25406110 Apr2g2006 2 25402335 25406110 ECH