Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1998 ATGGAACCTCTATGTGAGTTTTGTGGGATTGTGAGAGCTGTGGTTTATTGCAAGTCAGATTCTGCTTGTCTTTGTTTGCAATGCGATGACTGTGTACACTCTGCCAATTCTTTGTCTCGAAGGCATTCGCGTTCTCTCCTCTGTGATAAGTGCAATTCTCAGCCAGCAATGTTTCGTTGTATGGATCATAAGTTGTCTTTGTGCCAAGGTTGTGACTTGAACCCAAATAATTGTGCTGTATTGGGACATAGGCGCCTTGCATTGAATTGTTAAACTGGTTGTCCTTCTTTGGCCGAGTTTTCTAGGATTTGGTCCTTTGCGTTTGATGTTAATGGGTCATTTGGTGGTTGGGAATCACATAGTACTTTGCCTAAAAGTGATAGCTGCACAAGCAAACGTTTGGAGCAACCTGATCATAATGGTGGTTCGTTTGGATCATTGGTGAGTGACAAATTGGATGAAATGGAACCTTGTGTCAGATATGAACCTTGGATGGAACAACCTTCCACCATTCCTTCGAATCCATGTTACACCCCGTATTGCAAAGACCAAACATTTTTCTTTCCTGAAGACTCAAACCAGCCAAAGTTGCAGGGATGTGCAAATTTCAATGATCTTGGAATTCATGATGGGAATGATCTCTGTGACGGTCTCAATGTGGACAATGTTCAACTAAATTTTGAAAGTGCTGATGACATATTTGGCAGCTCTCAAGTTGCCACAAGATTCAACCTTGAGGATGGAGGAATGGACTGTCTATTGATGGATAGAACCATATCAGTAACAGAATCTAATAGATTTATTGAGAGTGCCATGGAGGCATCATCATCATCAGTCCAACAAGATTGTGTGACTTTTCAATCATCCACGGCTGGTGGTTCAGCTAGTGTGATGCAGACCATCAGCAGTAATGCAAATTGTGCACTTTTGAACCCTAGCAGCAATAGAAGCATCGATCTGGGATTTCCTCAGGGTCAAGTTCATTCAAACATACCACTTCAATTACCAAACATAACTGGTGAAAGTAGTGCTAATGAATATCAAGACTGTGGGTTATCGCCAGTGTTTCTTCCAGGCGAATCCCCCTGGGAATCAAATTTGGAGGGCACATGCCCACTAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCTTCTCGCAAAGCAAGGGCTGATACAAGGAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGTGACAAGGGATGTCTAA 1296 0.4182 MEPLCEFCGIVRAVVYCKSDSACLCLQCDDCVHSANSLSRRHSRSLLCDKCNSQPAMFRCMDHKLSLCQGCDLNPNNCAVLGHRRLALNC*TGCPSLAEFSRIWSFAFDVNGSFGGWESHSTLPKSDSCTSKRLEQPDHNGGSFGSLVSDKLDEMEPCVRYEPWMEQPSTIPSNPCYTPYCKDQTFFFPEDSNQPKLQGCANFNDLGIHDGNDLCDGLNVDNVQLNFESADDIFGSSQVATRFNLEDGGMDCLLMDRTISVTESNRFIESAMEASSSSVQQDCVTFQSSTAGGSASVMQTISSNANCALLNPSSNRSIDLGFPQGQVHSNIPLQLPNITGESSANEYQDCGLSPVFLPGESPWESNLEGTCPLARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRDV* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1998 430 CDD Bbox1_BBX-like 4 47 - -
Apr2g1998 430 Pfam CCT motif 374 416 IPR010402 GO:0005515
Apr2g1998 430 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Apr2g1998 430 ProSiteProfiles CCT domain profile. 374 416 IPR010402 GO:0005515
Apr2g1998 430 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 427 - -
Apr2g1998 430 SMART bboxneu5 1 47 IPR000315 GO:0008270
Apr2g1998 430 SMART bboxneu5 48 88 IPR000315 GO:0008270
Apr2g1998 430 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr2g1998 430 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 2 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1998 Apr-Chr2 25342990 25345226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1998 1 424 C2C2-CO-like Transcription Factor Family AT3G21880 42.361 3.75e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr2g1998 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1998 - - gmx:100804738 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1998 2 25342990 25345226 Apr2g1998 2 25342990 25345226 ECH