Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1992 ATGGAGACGAATTCTTCAGGTTGGCTTTATGATTATGGCTTTGATATCTGTGTTGCCGCTGCTGACTTCATGGCTGCTGACTCTGGTGGTTTCAGCTGGGTGCCTCAGACTCAGAGTCACACCTTCAAGGGTCTTTCCAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACCGTCCTTGAAAATGGCCCTTCAAAGCGGTTAAGGTCTGAATCATATGCATCTGGCTCCAAGGCATGCCGTGAGAAAGTGCGAAGGGATAAACTGAATGAGAGGTTTGTGGAACTGAGTTCCATCTTGGAGCCTGGTAGGCTGCCCAAAACAGACAAAGTTGCAATACTAAGCGACTCGGTTAGAGTGGTAACCCAATTAAGAAATGAAGCCCAGAGACTGAAAGAAATGAATGATGAATTAAAGGCAAAAATCAAAGAATTGAAGGCTGAAAAGAATGAGCTTCGTGACGAGAAGAATAGGCTGAAGGTAGAAAAAGAAAATTTGGAGCAGCAGGTCAAATTGACTAATGCACAGCCAAACTTTCTCCCTCAAGCCCCAGCTGCTAAAGGACAAGTAGCTAGCCACAAGATGATACCTTTCATTGGTTACCCTGGAATTGCCATGTGGCAATTTATGTCCCCTGCGGCAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 690 0.4478 METNSSGWLYDYGFDICVAAADFMAADSGGFSWVPQTQSHTFKGLSNMSLEMEYSLDSTVLENGPSKRLRSESYASGSKACREKVRRDKLNERFVELSSILEPGRLPKTDKVAILSDSVRVVTQLRNEAQRLKEMNDELKAKIKELKAEKNELRDEKNRLKVEKENLEQQVKLTNAQPNFLPQAPAAKGQVASHKMIPFIGYPGIAMWQFMSPAAVDTSKDHLLRPPVA* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1992 229 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983
Apr2g1992 229 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 4 229 - -
Apr2g1992 229 PANTHER BHLH TRANSCRIPTION FACTOR 4 229 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Apr2g1992 229 CDD bZIP 140 172 - -
Apr2g1992 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Apr2g1992 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 141 IPR036638 GO:0046983
Apr2g1992 229 SMART finulus 80 131 IPR011598 GO:0046983
Apr2g1992 229 CDD bHLH_AtILR3_like 79 154 - -
Apr2g1992 229 Coils Coil 122 177 - -
Apr2g1992 229 Gene3D - 78 154 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1992 Apr-Chr2 25301136 25303061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1992 16 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 55.217 2.05e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g1992 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1992 - - gmx:100806838 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1992 2 25301136 25303061 Apr2g1992 2 25301136 25303061 ECH