Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1988 ATGGACCCCAATCTCCAAACCATGTTTTCCGCCGACGCTCACTCCTTCGACCCCATGTTTTCCGGCGTCAGCCTCCAGTCACTTCTCTCTCTCAACCCATCTCTCTTTGCCGACGGCTTCCCCACCCTGGCCTCCCTAACCGACCACCCCAACCTCGACGACAAGAAGAAGCTCCTCATCCCCAAAACCGAGCCCCAACCCTTCAGCTTCTTCCCCAAATACCACCGTCTCCCCCAACTCCATTCTCCCGACCACAAACGCCACCGCCTCGACCCCTCCTCCGAAACTTCCCCGGCGATCGGGGGAAAAGCTCCGTCGATGATTCCTCAGAGCAACCTGGCACGGCAACGAAGGCAAAAGCTGAGCGAGAAGACACGGTGCTTGCAGAAACTAATGCCTTGGGACAAGAAAATGGACCAAGCTACCCTTCTAGAAGAAGCTTATAAATACGTGAAGTTTTTGCAGGCACAGTTCTGCGTCCTCCAATCCATGCCCTCTCAATCTCACTCTTCACCCTTCCTCAACAATGGTGCTGTTTTCGGTGACTTAGAGAGCCTTAACCGTTCCCAAGTTCTTCAGGTTCTCGTTAACTCACCCGTTGCTCAAACCATGCTTTATTCTCAAGGCTTTTGCGTTTTCTCCGTTGAACAGTTGGCGTTGCTTAGGAAACTATCAGACACCAGACAACTACAACATCGTGCTTCCTCCAAAACTTTCTTTAACTAA 726 0.5193 MDPNLQTMFSADAHSFDPMFSGVSLQSLLSLNPSLFADGFPTLASLTDHPNLDDKKKLLIPKTEPQPFSFFPKYHRLPQLHSPDHKRHRLDPSSETSPAIGGKAPSMIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQFCVLQSMPSQSHSSPFLNNGAVFGDLESLNRSQVLQVLVNSPVAQTMLYSQGFCVFSVEQLALLRKLSDTRQLQHRASSKTFFN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1988 241 Gene3D - 110 171 IPR036638 GO:0046983
Apr2g1988 241 PANTHER TRANSCRIPTION FACTOR BHLH117 10 236 - -
Apr2g1988 241 Pfam Helix-loop-helix DNA-binding domain 115 155 IPR011598 GO:0046983
Apr2g1988 241 MobiDBLite consensus disorder prediction 81 107 - -
Apr2g1988 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 154 IPR011598 GO:0046983
Apr2g1988 241 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 236 IPR045843 GO:0003700|GO:0006355
Apr2g1988 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 171 IPR036638 GO:0046983
Apr2g1988 241 SMART finulus 111 160 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1988 Apr-Chr2 25284435 25285160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1988 117 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 48.214 1.78e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g1988 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1988 - - aprc:113855910 480.33