Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1983 ATGTTAGCGAAAGCCCATAATAAAGGGGATGGATCTAAGTCCCTGGCTAAGATACTGGCAAGATGGAAAGAATATAATGCCCAACTTGATTCCTGCAATGATGCGGATAAGCCGGTTCGGAAAGTTCCCGCCAAAGGGTCGAAGAAGGGATGTATGAAAGGTAAAGGAGGGCCTGAGAACTCGCGGTGTAACTACAGAGGTGTAAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCTAACAGAGGAAACAGGCTCTGGCTAGGTACTTTTTCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCGGCAAGGGCAATGTATGGTTCTTGTGCGCGTCTCAACTTTCCCAACGTTTCCGTTTCCAGTTTCTCTGAGGAATCTTCCAAAGATTCTCCAGCTGCAAATCAATCTGGTTCCCCAATGGCAGTGACGGCACATACTGAGTCCATGATATCGCCAAATAACTCCAGGGTAGGTGATGCAGAGGATATGGATATGGAATCTATTTCCTTATCCTTAGGTGTAAAACACGAGAATGGGGATGGTGAATCAGGGACCAATTCGTCCCCTCCTTCATCCTCATGA 600 0.4767 MLAKAHNKGDGSKSLAKILARWKEYNAQLDSCNDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFSTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPAANQSGSPMAVTAHTESMISPNNSRVGDAEDMDMESISLSLGVKHENGDGESGTNSSPPSSS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1983 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 177 - -
Apr2g1983 199 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Apr2g1983 199 MobiDBLite consensus disorder prediction 38 59 - -
Apr2g1983 199 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Apr2g1983 199 MobiDBLite consensus disorder prediction 127 161 - -
Apr2g1983 199 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Apr2g1983 199 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Apr2g1983 199 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Apr2g1983 199 MobiDBLite consensus disorder prediction 127 199 - -
Apr2g1983 199 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Apr2g1983 199 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Apr2g1983 199 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Apr2g1983 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1983 Apr-Chr2 25227207 25228892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1983 8 153 AP2-EREBP Transcription Factor Family AT2G40340 56.667 9.44e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr2g1983 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1983 - K09286 gmx:100499747 323.939