Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1978 ATGAAGAACTGCGAACTGTGTAAGGTTCCGGCGAGGACCTTCTGTGAGTCTGACCAGGCAAGCTTATGCTGGGACTGCGACGCTAAGGTACATGGAGCCAACTTCTTGGTAGCTAGACACACTAGAACCCTTCTCTGCCACACCTGTCAGTCCCTCACGCCGTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACTGTCTCCTTGTGCGAGAGGTGCGCCGGCGGAACCAAAGAACAGGGCGAAGAGAGTGAAGGAGGCAATGACGAGGACATATACACGGATGGCGAGGATGATGACGAGGAGGATGAGGATGAGGAAGACGAGGTTGTAGGCGACGAGGATGGAGATAACCAGGTTGTCCCTTGGTCCTCCACGGCGCCGCCACCGGCTCCAAGTTCATCCAGCAGCGAAGAGTCCGTTAGCCGGTGCAACAACGGCGAGGAGGATATTTCTCAGTCAGTGTCGACATTGAAACGACGTCGTCAGGATGACGATTTTCAGGGTTCGAACAGTTGGGGGATATCAACCGAGGGAGACAGCGAATTGGGGAGAGGAGGTTGGCTTGTTAGAGTGCGACGGAGAACCGCCGTGGAAGGTGTCGATGAGGCGGGGGAGGGACGGAGAGAGTAG 630 0.573 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHTCQSLTPWKASGAALGNTVSLCERCAGGTKEQGEESEGGNDEDIYTDGEDDDEEDEDEEDEVVGDEDGDNQVVPWSSTAPPPAPSSSSSEESVSRCNNGEEDISQSVSTLKRRRQDDDFQGSNSWGISTEGDSELGRGGWLVRVRRRTAVEGVDEAGEGRRE* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1978 209 MobiDBLite consensus disorder prediction 76 187 - -
Apr2g1978 209 PANTHER - 1 197 - -
Apr2g1978 209 CDD Bbox1_BBX-like 4 45 - -
Apr2g1978 209 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Apr2g1978 209 MobiDBLite consensus disorder prediction 83 114 - -
Apr2g1978 209 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 197 - -
Apr2g1978 209 MobiDBLite consensus disorder prediction 118 152 - -
Apr2g1978 209 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Apr2g1978 209 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1978 Apr-Chr2 25179670 25181026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1978 2 115 C2C2-CO-like Transcription Factor Family AT5G54470 54.386 1.11e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr2g1978 zf-B_box 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1978 - - gmx:100801024 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1978 2 25179670 25181026 Apr2g1978 2 25179670 25181026 ECH
Apr2g1978 2 25179670 25181026 Apr3g1118 3 25755570 25756895 PCT