Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1975 ATGAAAATTATCCCCGATAAAAGTGGGCTGAGGAAAGGAGCATGGACACCAGAGGAAGATAAGAAGTTGGTTGCTTATGTTACAAGATATGGCCACTGGAATTGGACCCTACTCCCCAAGTTTGCTGGTCTTGAGAGGTGCGGAAAGAGTTGTAGGCTAAGGTGGATGAATTACTTAAGGCCTAATATCAAAAGAGGGAACTTCACTCAAGAAGAAGATGAGACTATTATGAAGCTGATCCAACGTCTTGGTAACAGGTGGTCTGCGATTGCTGCTCAGCTGCCGGGAAGAACGGACAACGAAATAAAAAACTACTGGCACACTCATCTGAAGAAGCGATATCAACAAAATGAAAAATCTGAAGTTTCCAAGTCGAAGGATGAATCCCCACTTCAACAAATGCCAAAACATGCTGATGCTCTTCCATCAACATCTAAATCCACCCAACTCTCTATAACAACAGATCATAGCAACGAATATTTTGTTCTTGAAGATGAATTCGCTCTTCTGAATGCATACTCAGAGCCCTTGAACGGAAACTTCTGGTTGGAACCTTATATGCCCGACATTTCGATTGCTCCTTGTGAAGATTTGGATTTGGGGGCACAAACCCATTGCTTTAGCCCTTTGCGTGACGTGCCACTTTGGAGTCATGACCATGATTAG 666 0.4324 MKIIPDKSGLRKGAWTPEEDKKLVAYVTRYGHWNWTLLPKFAGLERCGKSCRLRWMNYLRPNIKRGNFTQEEDETIMKLIQRLGNRWSAIAAQLPGRTDNEIKNYWHTHLKKRYQQNEKSEVSKSKDESPLQQMPKHADALPSTSKSTQLSITTDHSNEYFVLEDEFALLNAYSEPLNGNFWLEPYMPDISIAPCEDLDLGAQTHCFSPLRDVPLWSHDHD* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1975 221 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Apr2g1975 221 MobiDBLite consensus disorder prediction 113 149 - -
Apr2g1975 221 Gene3D - 66 139 - -
Apr2g1975 221 SMART sant 64 112 IPR001005 -
Apr2g1975 221 SMART sant 11 61 IPR001005 -
Apr2g1975 221 Gene3D - 12 64 - -
Apr2g1975 221 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Apr2g1975 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Apr2g1975 221 MobiDBLite consensus disorder prediction 113 133 - -
Apr2g1975 221 CDD SANT 67 110 IPR001005 -
Apr2g1975 221 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Apr2g1975 221 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Apr2g1975 221 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 5 143 - -
Apr2g1975 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 143 - -
Apr2g1975 221 CDD SANT 14 59 IPR001005 -
Apr2g1975 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Apr2g1975 221 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1975 Apr-Chr2 25136636 25138729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1975 6 171 MYB Transcription Factor Family AT2G31180 50.000 1.16e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1975 Myb_DNA-binding 6.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1975 K09422 - gmx:100810385 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1975 2 25136636 25138729 Apr2g1975 2 25136636 25138729 ECH
Apr2g1975 2 25136636 25138729 Apr3g1110 3 25672537 25673867 PCT
Apr3g1111 3 25682266 25684984 Apr2g1975 2 25136636 25138729 PCT