Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1974 ATGGGGAGAGCCCCTTCTTCTGACAAAAATGGATTGAAGAAAGGCGCTTGGGCACCTGAGGAAGACAAGAAGTTGATTGCTTATGTCACTAAATATGGTCACTGGAATTGGCGCCTACTCCCCAAATTTGCAGGTCTTGCGAGGTGTGGGAAGAGTTGCAGATTGAGGTGGCTTAACTATCTGAGGCCCGATGTCAAGAGAGGGAACTTCAGTCACCAAGAAGAAGAGACTATTATCAGACTTCACGAAAAGCTTGGTAATAGATGGTCAACGATTGCCGCTCAATTGCAAGGGCGAACAGATAACGAGATAAAGAATCACTGGCACACAACCCTGAAGAAGCGTTTTGAACAGAAATCAGACAATAGACGTGGAACTGCAAAAACCAAAGTTTCAAAGTCAGTGGATGCCAATCGTAGTGATAATATTTGTCCATTGTCACCACAGCCATCGTCTAGTGGACTCTCCTGCTCAACAACAGACACTACAAAAGCCACAAACCATGAAATTTTGGTTCCAGAAGATGATGATCTTTCTTTCTTGGACGCATACACGGAGCCTGAGAGTGCAAATTTCTGGACAGAGCCATATGTAATTGACGATTCCTATGTCCCTCCTGGTGAAGCAGTTGTGCCTGAATACTTTAGTCCTATGTGTGATGTAGAACTTTGGAGCCAAAATGATTTGTACCTGCAGGAATGTGAGGGTTTGTTTCACTGA 720 0.4431 MGRAPSSDKNGLKKGAWAPEEDKKLIAYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPDVKRGNFSHQEEETIIRLHEKLGNRWSTIAAQLQGRTDNEIKNHWHTTLKKRFEQKSDNRRGTAKTKVSKSVDANRSDNICPLSPQPSSSGLSCSTTDTTKATNHEILVPEDDDLSFLDAYTEPESANFWTEPYVIDDSYVPPGEAVVPEYFSPMCDVELWSQNDLYLQECEGLFH* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1974 239 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr2g1974 239 CDD SANT 69 112 IPR001005 -
Apr2g1974 239 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr2g1974 239 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr2g1974 239 CDD SANT 16 61 IPR001005 -
Apr2g1974 239 MobiDBLite consensus disorder prediction 115 160 - -
Apr2g1974 239 Gene3D - 69 143 - -
Apr2g1974 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr2g1974 239 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr2g1974 239 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr2g1974 239 SMART sant 66 114 IPR001005 -
Apr2g1974 239 SMART sant 13 63 IPR001005 -
Apr2g1974 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr2g1974 239 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 202 - -
Apr2g1974 239 Gene3D - 13 66 - -
Apr2g1974 239 MobiDBLite consensus disorder prediction 131 160 - -
Apr2g1974 239 MobiDBLite consensus disorder prediction 115 130 - -
Apr2g1974 239 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1974 Apr-Chr2 25114139 25116149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1974 1 202 MYB Transcription Factor Family AT2G31180 49.261 2.58e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1974 Myb_DNA-binding 5.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1974 K09422 - gmx:100815765 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1974 2 25114139 25116149 Apr2g1974 2 25114139 25116149 ECH
Apr3g1110 3 25672537 25673867 Apr2g1974 2 25114139 25116149 PCT