Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1973 ATGGTGAGAACCCCTTCTTCTGACAAAAGTGGACTTAAGAAAGGCACTTGGACTCCAGAAGAGGATAAGAAATTAATAGCTTATGTCACTCGCTATGGTTGTTGGAATTGGCGCCAACTCCCAAGATTTGCAGGTCTGGCAAGGTGTGGAAAGAGTTGCAGACTGAGGTGGCTGAATTATCTCAGACCCAACATAAAAAGAGGGAACTTCACTGAAGAAGAAGAAGAAACTGTAATCAAACTACACGAAAAGCTGGGTAACAAATGGTCCATCATTGCCACTCATTTACCCGGTAGAACTGACAACGAAATAAAGAACCACTGGCACACTACCCTCAAGAAACGTTTTGGAAAGGACAGAGGCACTGAATCAAATGATTCTGAATCGATGAAGCAAGGGAAAGACTCTGTTCAGAACAATGATAGTTCTCCATCCACTTCCAAGACCTCTTGTGACCCTTTGTCCCCTCAATTATCCTCAAGCCAATTCTCCTCCACACCCTCAGCTAGTACCACAGGGGCAACTAGCGAAATTGGCTTAAATTTTATGGATGCATGCACAGAGGATGTGAATGAGAATATGTGGATAGAGTCATGTCTAACTGAGATAATTGGTGATGGTAATTTTCAAGGTTCAGATACTAGAGGGACCCCAGATACGTGGGAATTATCTCCCCCGTCATCTTCGAGTGAAAATTTGGTTATGGAGAATGACCATTTTGCCTTTCTAGAAGCAACACAGCCAACAACATATTGTTGGACACAACCGTATGTTGTGGACTTGTCCCATGTTCCAAATGAACTGCTTGCACCTTTGGCGAATGAATCTGATCAGCAATATTTTTCTCCCATGTATGATGCGGACCTTTGGTGTCCAAGTAATTCGCATGATTTACATGTAAGCTTATTCCCATGA 915 0.4284 MVRTPSSDKSGLKKGTWTPEEDKKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNFTEEEEETVIKLHEKLGNKWSIIATHLPGRTDNEIKNHWHTTLKKRFGKDRGTESNDSESMKQGKDSVQNNDSSPSTSKTSCDPLSPQLSSSQFSSTPSASTTGATSEIGLNFMDACTEDVNENMWIESCLTEIIGDGNFQGSDTRGTPDTWELSPPSSSSENLVMENDHFAFLEATQPTTYCWTQPYVVDLSHVPNELLAPLANESDQQYFSPMYDADLWCPSNSHDLHVSLFP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1973 304 CDD SANT 69 112 IPR001005 -
Apr2g1973 304 MobiDBLite consensus disorder prediction 210 229 - -
Apr2g1973 304 Gene3D - 68 143 - -
Apr2g1973 304 CDD SANT 16 61 IPR001005 -
Apr2g1973 304 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 228 - -
Apr2g1973 304 MobiDBLite consensus disorder prediction 131 174 - -
Apr2g1973 304 Gene3D - 13 66 - -
Apr2g1973 304 SMART sant 13 63 IPR001005 -
Apr2g1973 304 SMART sant 66 114 IPR001005 -
Apr2g1973 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr2g1973 304 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr2g1973 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr2g1973 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr2g1973 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr2g1973 304 MobiDBLite consensus disorder prediction 112 174 - -
Apr2g1973 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr2g1973 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Apr2g1973 304 MobiDBLite consensus disorder prediction 112 130 - -
Apr2g1973 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1973 Apr-Chr2 25105159 25106530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1973 1 166 MYB Transcription Factor Family AT2G31180 53.614 2.49e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1973 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1973 K09422 - gmx:100811124 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1973 2 25105159 25106530 Apr3g1108 3 25654445 25655702 PCT