Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1972 ATGGAGTTTGACCTTGAAAACCCTCTTGGAAACTTCCACGACCTGCCCTGTGACGCTGTCCCTTCCCTCTTTCTCATTGAATCTGACCACATCCCACCTCCGAATTACTGTCAGTCTCTTAAAGCCACAGACTTTGACATTTCTGTTAGAAGAGATGTCGTCTCTTTTATCTCGCAGTTGTCCTGCACCTTCGATCCAGTTCTTCCTTACCTAGCTATCAACTATTTAGATCGCTTCCTAGCTAACCAAGGAATTTTGCAACCAAAGCCATGGGCGAACAAGCTCCTTGCAATCTCTTGCTTTTCTCTAGCTGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTCCAAGCTCTTCTAAACCATGGTGATACTGTCATTTTTGAGACACAAACAATACAAAGAATGGAAGCCCTCGTCTTGGGGACTCTTCAGTGGCGAATGCGTTCGATCACCCCCTTCTCTTTCATTCCTTTTTTCATCAATCTGTTCGGCCTCAAAGACCCAACATTGAAGAAGGTTCTGAAAGATAGAACATCTGAGATTATATTGAAGTCACAAAGAGAGATAAAGGTTTTGGATTTCAAGCCATCAATAGTTGCTGCTTCATCCCTTCTTTATGCTTCACATGAGTTGTTTCCCTTCCAATATCCATGCTTCTTAAGAGCAATATCCAATTGTTCCTATGTTAATAAAGAAAGTGTGATGCAGGGTTATAATGTCATACAAGACATAGTAAGAGAGGAGTACGAATCTGTGTTCAATGTGAATTCAAGTTCAGATACACCGGTTAATGTGTTAGACGAGCATTTTCTGAGCATGGAAAGTGAAAAAACCAACGGAATCAACGTTGCTTCCACTATGATACAAAAGCAGGACTTGAAGAGAAGGAAAGTCACCGATTATGGCAACAATTGCACGGTCCAGTTTTCTCATTTTCACCAATGCTGA 954 0.4172 MEFDLENPLGNFHDLPCDAVPSLFLIESDHIPPPNYCQSLKATDFDISVRRDVVSFISQLSCTFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKTEYSATDVQALLNHGDTVIFETQTIQRMEALVLGTLQWRMRSITPFSFIPFFINLFGLKDPTLKKVLKDRTSEIILKSQREIKVLDFKPSIVAASSLLYASHELFPFQYPCFLRAISNCSYVNKESVMQGYNVIQDIVREEYESVFNVNSSSDTPVNVLDEHFLSMESEKTNGINVASTMIQKQDLKRRKVTDYGNNCTVQFSHFHQC* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1972 317 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 303 - -
Apr2g1972 317 Pfam Cyclin, C-terminal domain 152 261 IPR004367 -
Apr2g1972 317 Gene3D - 33 150 - -
Apr2g1972 317 Pfam Cyclin, N-terminal domain 28 149 IPR006671 -
Apr2g1972 317 SMART cyclin_7 51 143 IPR013763 -
Apr2g1972 317 PANTHER CYCLINS 5 303 IPR039361 -
Apr2g1972 317 SUPERFAMILY Cyclin-like 13 149 IPR036915 -
Apr2g1972 317 SMART Cyclin_C_2 152 267 IPR004367 -
Apr2g1972 317 Gene3D - 23 231 - -
Apr2g1972 317 CDD CYCLIN 50 142 IPR013763 -
Apr2g1972 317 SUPERFAMILY Cyclin-like 134 229 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1972 Apr-Chr2 25090658 25092537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1972 1 298 Core Cell Cycle Gene Families AT4G03270 45.192 1.90e-78 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1972 K18812 - gmx:100799951 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1972 2 25090658 25092537 Apr2g1972 2 25090658 25092537 ECH
Apr2g1972 2 25090658 25092537 Apr3g1107 3 25642678 25644601 PCT