Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1968 ATGGGAAGAGCACCTTGCTGTGACAAGAATGGACTCAAGAAAGGTCCATGGACCCCCGAGGAGGATCTCATGCTCATCAACTACATTCAAACCCATGGACAAGGAAATTGGCGAACCCTCCCCAAGAATGCTGGCCTACAAAGATGTGGCAAGAGTTGCCGCCTTCGATGGACTAATTACCTAAGGCCGGATATCAAGAGAGGAAGGTTCTCCTTTGAAGAAGAAGAGACCATCATTCAGCTGCACAGTGTCTTAGGAAACAAGTGGTCGGCTATAGCAGCAAGGCTGCCAGGAAGAACCGACAATGAAATAAAGAACTATTGGAACACCCACATTAGGAAGAGGCTACTTAGAATGGGAATTGACCCCGTTACGCACGCTCCACGCCTTGATCTACTTGACATGTCCTCAATTTTAAGGTCAGCGTTAGGCAACGCATCGCTTCTCAATATGCAAGGCTTATTGGGTGCCCAAGCGTTGGTGAATTTGTTATCTTTGAAGAATGAGAACATATCACAAATGGTTTCACAAAATCTACAACAAATCAATGCTGGGAATTGTCAACTACAAAGCCAAGTTGCGCCTCAAGAGTTTATGAATCAGTTTCAGACACCAACTCAAAGCAACAACTTGAATGGCATATCAAGTTCCCCAGAGAATTCGGTTCCTTCCTATATTGGGGAGAATTTGTTTGCTCAACAAAACCAAATTGATCTGCTAGAGAGCCCGGAATTGTTACATTACTTAAATAATGCAAACCAAAACATGGGCTATGAATCAGTTCTTTCTACGCCTTTATCTACCCCAACCCCATTAAATTCTTCATCTACGTATGTAAATAGCAACACGGAGGAAGAGAGGGACACCTATTGCAGCGATGTATTCAAGTTAGAAATTCCAGAGAGTCTGGACATTAATGACTTCTTGTAA 930 0.4333 MGRAPCCDKNGLKKGPWTPEEDLMLINYIQTHGQGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSALGNASLLNMQGLLGAQALVNLLSLKNENISQMVSQNLQQINAGNCQLQSQVAPQEFMNQFQTPTQSNNLNGISSSPENSVPSYIGENLFAQQNQIDLLESPELLHYLNNANQNMGYESVLSTPLSTPTPLNSSSTYVNSNTEEERDTYCSDVFKLEIPESLDINDFL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1968 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr2g1968 309 CDD SANT 69 112 IPR001005 -
Apr2g1968 309 Gene3D - 13 66 - -
Apr2g1968 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr2g1968 309 CDD SANT 16 61 IPR001005 -
Apr2g1968 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr2g1968 309 Gene3D - 69 116 - -
Apr2g1968 309 MobiDBLite consensus disorder prediction 262 285 - -
Apr2g1968 309 PANTHER TRANSCRIPTION FACTOR MYB41 1 304 - -
Apr2g1968 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr2g1968 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 304 - -
Apr2g1968 309 SMART sant 13 63 IPR001005 -
Apr2g1968 309 SMART sant 66 114 IPR001005 -
Apr2g1968 309 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr2g1968 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr2g1968 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1968 Apr-Chr2 25059007 25060292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1968 1 309 MYB Transcription Factor Family AT4G21440 49.432 1.28e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1968 Myb_DNA-binding 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1968 K09422 - gmx:100812189 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1968 2 25059007 25060292 Apr2g1968 2 25059007 25060292 ECH
Apr2g1968 2 25059007 25060292 Apr3g1103 3 25609494 25610731 PCT