Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr2g1923 | ATGGCCTTAGATCAGTATCTTGAGGAGGCTGTGCCCCAAATAAATTCCTTCAAAGATAAATCGTCTCTGGAAATGTGGCAATGTTCCAGTGATGATGCTGCAGATTCTGATAGAAATGCTAGCGGCTTTGATTGCAACATATGCCTCGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCAATTCCCATAGCATCTCGTCTGAAAATGAAGAGAAGCAGAACCAACAATGTCCAGTATGCAAATCAGAAATATCTCAGTCATCCCTTGTTCCACTATATGGCCGCGGCCAAACCTCGGTATCTTCTGAGGGCAAGGGTCACCAAGTTGGGATCGTCGTACCGCGAAGACCATCTGGTCCTTCATGGGTGGCTAACTCAGCAAGGTCACTTGATTCTGCTACCATTTCCCAACCTACTTCTCAACTTTATCATCACCATTATCGCCATCAACCTCAACAATTCAACTCAGTTCCAGGCAGTTACACTTCATCCATGTTCAACACAGGAGGTTCACTGACAAACGCATTTGATACAACATATGGAGTCTTTGGTGAGATGATATATGCAAGAGTCTTTGGAAACCAGATGACTAACATATACACATACCCAAATTCATATGATCTTTCAGGGAGCAGTAATCCAAGGATCAGGAGGCATTTAATGCAAGTTGATAGGTCACTCAGTAGAATCTGTTTCTTCCTTCTGTGTTGCATAGTTTTGTGTCTTCTCTTATTTTGA | 777 | 0.435 | MALDQYLEEAVPQINSFKDKSSLEMWQCSSDDAADSDRNASGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNSHSISSENEEKQNQQCPVCKSEISQSSLVPLYGRGQTSVSSEGKGHQVGIVVPRRPSGPSWVANSARSLDSATISQPTSQLYHHHYRHQPQQFNSVPGSYTSSMFNTGGSLTNAFDTTYGVFGEMIYARVFGNQMTNIYTYPNSYDLSGSSNPRIRRHLMQVDRSLSRICFFLLCCIVLCLLLF* | 259 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr2g1923 | 258 | Pfam | Zinc finger, C3HC4 type (RING finger) | 45 | 93 | IPR018957 | GO:0046872 | |
Apr2g1923 | 258 | ProSiteProfiles | Zinc finger RING-type profile. | 45 | 94 | IPR001841 | - | |
Apr2g1923 | 258 | CDD | RING-HC_AtRMA_like | 43 | 95 | - | - | |
Apr2g1923 | 258 | SMART | ring_2 | 45 | 93 | IPR001841 | - | |
Apr2g1923 | 258 | ProSitePatterns | Zinc finger RING-type signature. | 60 | 69 | IPR017907 | - | |
Apr2g1923 | 258 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 3 | 258 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Apr2g1923 | 258 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA1 | 3 | 258 | - | - | |
Apr2g1923 | 258 | SUPERFAMILY | RING/U-box | 41 | 106 | - | - | |
Apr2g1923 | 258 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 108 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr2g1923 | Apr-Chr2 | 24723262 | 24726645 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr2g1923 | 30 | 258 | C3H Transcription Factor Family | AT4G28270 | 36.325 | 8.52e-43 | 142 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr2g1923 | K10666 | - | gmx:100785491 | 397.127 |