Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1923 ATGGCCTTAGATCAGTATCTTGAGGAGGCTGTGCCCCAAATAAATTCCTTCAAAGATAAATCGTCTCTGGAAATGTGGCAATGTTCCAGTGATGATGCTGCAGATTCTGATAGAAATGCTAGCGGCTTTGATTGCAACATATGCCTCGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCAATTCCCATAGCATCTCGTCTGAAAATGAAGAGAAGCAGAACCAACAATGTCCAGTATGCAAATCAGAAATATCTCAGTCATCCCTTGTTCCACTATATGGCCGCGGCCAAACCTCGGTATCTTCTGAGGGCAAGGGTCACCAAGTTGGGATCGTCGTACCGCGAAGACCATCTGGTCCTTCATGGGTGGCTAACTCAGCAAGGTCACTTGATTCTGCTACCATTTCCCAACCTACTTCTCAACTTTATCATCACCATTATCGCCATCAACCTCAACAATTCAACTCAGTTCCAGGCAGTTACACTTCATCCATGTTCAACACAGGAGGTTCACTGACAAACGCATTTGATACAACATATGGAGTCTTTGGTGAGATGATATATGCAAGAGTCTTTGGAAACCAGATGACTAACATATACACATACCCAAATTCATATGATCTTTCAGGGAGCAGTAATCCAAGGATCAGGAGGCATTTAATGCAAGTTGATAGGTCACTCAGTAGAATCTGTTTCTTCCTTCTGTGTTGCATAGTTTTGTGTCTTCTCTTATTTTGA 777 0.435 MALDQYLEEAVPQINSFKDKSSLEMWQCSSDDAADSDRNASGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNSHSISSENEEKQNQQCPVCKSEISQSSLVPLYGRGQTSVSSEGKGHQVGIVVPRRPSGPSWVANSARSLDSATISQPTSQLYHHHYRHQPQQFNSVPGSYTSSMFNTGGSLTNAFDTTYGVFGEMIYARVFGNQMTNIYTYPNSYDLSGSSNPRIRRHLMQVDRSLSRICFFLLCCIVLCLLLF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1923 258 Pfam Zinc finger, C3HC4 type (RING finger) 45 93 IPR018957 GO:0046872
Apr2g1923 258 ProSiteProfiles Zinc finger RING-type profile. 45 94 IPR001841 -
Apr2g1923 258 CDD RING-HC_AtRMA_like 43 95 - -
Apr2g1923 258 SMART ring_2 45 93 IPR001841 -
Apr2g1923 258 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Apr2g1923 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 258 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr2g1923 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 258 - -
Apr2g1923 258 SUPERFAMILY RING/U-box 41 106 - -
Apr2g1923 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 108 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1923 Apr-Chr2 24723262 24726645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1923 30 258 C3H Transcription Factor Family AT4G28270 36.325 8.52e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1923 K10666 - gmx:100785491 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1923 2 24723262 24726645 Apr2g1923 2 24723262 24726645 ECH