Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1906 ATGTTTGCCACTGAAAGATTGGAGCTTTGTTTGTTTAAGAGGAGGAGGGGGCTGGGAATTTTGTTTCAGATTGCATTTGAGTGGTGGGTTGTTCTACAGTTACTTAGTCCTGTGGCGGGTCTCAGACCCTTAAGAGAGAGAAGTCGATCATGGGGTGATGAGTGGCTATATACAAGAAAGGATGACAGTAACTTAGGCCCATTTTCACAATGGAACATAACAGGAACTTACAAAGGAACTTGGAAGTTTCTAGATACAACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGAAATTCTGTAATTGAATTAGTTAGTACGCCCACAAAGATAAGTGGAGTACATTATGTTCAGGGAGTAGTTATATTCCATGATGTGTTAGACAATGAATATGATGGTGGTTCTCAAATCAGAATAGAAGGTGTATATATATGGCCATTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAGAGAGGGAGAGTTGAATCAGAATGAAGATTACATTTTATCTAATCCATATCATCTAGTACTGCAAGATTCTTCGCGAGATAAGATGTGGAGAAGAAAGCATTCTCTAATACATGATGTGGAGAAACATTGTAATATTGAGATTGCTGCACAAATCTCACACTTGCCATCATCAAATAATGAAGGCGAGAATGATCATTTTCATCTAGAAGGGTTAATGGAGAGTCCCTCAGCGGATGATGATGGGGACTGCTTTTCTCCATTGCTGTTAAATGCAACATCTGTCAAAATTGAGGTCTACTATAACAAAGCGGTGAACTATACCTTGATGGTTACTTTTATCTCTTTCTTGCAAGTCCTTCTATTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGATCCACTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTGCATCTAACTGCAGGAATTCTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTATTCTCAATATTTGAGATGAGATACCTCCTTGCTATCTGGAAGGCAAGTAGGCCTTTGAGTAATGGGGAAGGTTGGGAGACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTTTTTGAGACCTATTCTTCTTCTTATGTACTCTTTTTGGATACCACAGATAATCACCAATGTTATCCGCGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGGATAACTATTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAAAGCTGGTGTGTTTGCTTGGCTATATTTATCGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGCCAGATTCTACCTGAGAAATATAGTTATTATAGGAGGTTTGATCAAGACACAAGACATGCTACAGACTGTGTTATTTGCATGACAGCCATTGATCTTTCACAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGTCGCCCACTACCCCCTGCCTAG 1689 0.3996 MFATERLELCLFKRRRGLGILFQIAFEWWVVLQLLSPVAGLRPLRERSRSWGDEWLYTRKDDSNLGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRKTNGNSVIELVSTPTKISGVHYVQGVVIFHDVLDNEYDGGSQIRIEGVYIWPFRQLRMVANSGREGELNQNEDYILSNPYHLVLQDSSRDKMWRRKHSLIHDVEKHCNIEIAAQISHLPSSNNEGENDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSSTQSGSTKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNFLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITITRLAIPLYIFGCPNNFMRIEPDKSWCVCLAIFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQDTRHATDCVICMTAIDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1906 562 PANTHER RING ZINC FINGER PROTEIN 13 562 - -
Apr2g1906 562 SMART ring_2 512 555 IPR001841 -
Apr2g1906 562 Pfam Ring finger domain 511 556 IPR001841 -
Apr2g1906 562 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 13 562 - -
Apr2g1906 562 ProSiteProfiles Zinc finger RING-type profile. 512 556 IPR001841 -
Apr2g1906 562 SUPERFAMILY RING/U-box 494 561 - -
Apr2g1906 562 SMART ringv_2 511 556 IPR011016 GO:0008270
Apr2g1906 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 562 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1906 Apr-Chr2 24547098 24556840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1906 512 559 C3H Transcription Factor Family AT4G12190 37.500 2.32e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1906 K23788 - gmx:100780140 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1906 2 24547098 24556840 Apr2g1906 2 24547098 24556840 ECH