Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1904 ATGGACAAGGTGAAGAGGGAGGGCATGGAAGATTGTGTTCACAGCCAAAATGGGTACTTGGAGTTGGAGGAGGACAAGAAGAAGAAAGGGGTGTTGGCGATGGGTAGGAAGAAAGGGTCTGCAAGTGCTGGTGGTGGTAGTAGTGGCAATAGCATGCGCTGTTGTCAAGCTGAGAAGTGCAACGTTGATCTTCATGATGCTAAGCAGTACCACAGAAGACACAAGGTGTGTGAATATCATGCCAAGGCTCAAGTGGTGATTGTGGCTGGCATCAGACAACGCTTTTGTCAGCAATGTAGCAGGTTCCACGAATTAGCTGAATTTGATGACAAAAAAAGAAGTTGCCGCAGGCGTTTGGCTGGACACAATGAGCGGCGGAGAAAGAACTCTGATCAGTCTCAAACAGAAGGCTCAAACCTTCAAGGGACAAGCCCTCATTTGAAGGACATTGCTTGTGGACATGCTAATGACAGGGGAAGAATTCACATCACAAATCAAGAAAATGATGCCTACAAACATTTTCAGATAAGATGA 534 0.4625 MDKVKREGMEDCVHSQNGYLELEEDKKKKGVLAMGRKKGSASAGGGSSGNSMRCCQAEKCNVDLHDAKQYHRRHKVCEYHAKAQVVIVAGIRQRFCQQCSRFHELAEFDDKKRSCRRRLAGHNERRRKNSDQSQTEGSNLQGTSPHLKDIACGHANDRGRIHITNQENDAYKHFQIR* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1904 177 SUPERFAMILY SBT domain 53 132 IPR036893 GO:0003677|GO:0005634
Apr2g1904 177 Pfam SBP domain 55 128 IPR004333 GO:0003677
Apr2g1904 177 Gene3D - 45 116 IPR036893 GO:0003677|GO:0005634
Apr2g1904 177 ProSiteProfiles Zinc finger SBP-type profile. 52 129 IPR004333 GO:0003677
Apr2g1904 177 MobiDBLite consensus disorder prediction 119 151 - -
Apr2g1904 177 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 26 177 - -
Apr2g1904 177 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 26 177 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1904 Apr-Chr2 24539727 24541372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1904 44 177 SBP-box Gene Family AT3G15270 55.224 1.77e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr2g1904 SBP 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1904 - - ccaj:109810441 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1904 2 24539727 24541372 Apr2g0412 2 4843679 4844994 ECH
Apr2g1904 2 24539727 24541372 Apr5g0124 5 1118038 1119433 ECH
Apr2g1904 2 24539727 24541372 Apr2g1904 2 24539727 24541372 ECH
Apr2g1904 2 24539727 24541372 Apr1g1438 1 23709663 23711589 ECH
Apr2g1904 2 24539727 24541372 Apr3g1782 3 33650360 33652550 ECH