Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1903 ATGCCTGCACAGAAGCGCTCTTTGCCCGAGTCTCTTGAGGATGGGGACACTTCGCAGCACCATCTCTTCCATCCTCGTCATGCCAAGCAGCAGCAGCAGCAACAACAACAGGACCAACCGCAGGAACACGAGGAGGATGAAGAGGAAGACAACGACGAGGAAGAGGAGGAGGAGGAGGAAGATGAAGAGGAGGAGCAAGGAGAAGAGGAGGAGGAAGAAGAACGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGCCACACCATAACGACGACAAGGAACAACCACAGGATTCCGGCGAAACCCCATCTTCTGACTCTGATGAAAAACCCGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGATTTTGCAGGGAATGCATTGACAAATCAATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGTTCATTGAGAGATGATCCAAACTATGACGCCCTTATTGCGGCCTTATATCCAGACATTGAGAAATATGAGGAAGAGGAACTTGAATTTCGTGAGGAGGAGAAGAACCGCAATAAGCTGATTCAAGCTTCGATAGCAAAAGTAGTTCAACGGCAATCTGAAGCACTGGTTAAGAGACGTAAAGATACACCAGGTTTTGTGACAAGATCACAGCGTAATCAACGAAACATTCAGTCCAGGAGACAAAATCAAGTGACAGAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAAGACTCATCTTCAGCTGATGAGAGATCTACCGAACTCCGACAGAGAAGGCGAAAGAGATGGACTAGAGTTCGCCCCTCACAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGATGCATAGAAAGTGATATGGATATAAGTAGAGAAAATCGAGGAATTTCAAGGCAGGTGTCAAAACCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTCAGAAGTAACACTCGGCATGGCAGTGGTGGTGGTAGCAATAGCAAGAATTCTCGCAGTAGTCGATTGTCTAAGTTGGTTGATCATCTCCGAAGTTTGGATGAAAGCACTGATGAGTTGGATGTCCATCTCATGCTTGTTTCTCTGGACAAACAAAGTACACCAAGTTTACCACAACCACACCTTTGCTGTCGACCGACCTTGTCTGTCAAGCACCTTTGTGAATATGTTGCTCGTCAGACACCACTGCCAGTTGAAGCAGTTGAGATACTTGCAGTGAAAGGATGCTGCAGTACAAATTGCAACAAGTCAGCCAATGAGAATTCAGCCCTGATATATGATGAGCTAACAACGCTGGTTATAGATCCACACAAAGATGAACTTGAAGTTTTGCAAGGACACGAGTCTATGGCAGGGCTTAGATCTAAATGCATTTCTAAAAGGGAGCATTTGATTCTGGCGTACAGGCTGAAGGAGACATCATAG 1524 0.4514 MPAQKRSLPESLEDGDTSQHHLFHPRHAKQQQQQQQQDQPQEHEEDEEEDNDEEEEEEEEDEEEEQGEEEEEEEREEEEEEEEEEEEEGPHHNDDKEQPQDSGETPSSDSDEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKLIQASIAKVVQRQSEALVKRRKDTPGFVTRSQRNQRNIQSRRQNQVTEGSEDNEEENDNNEKDSSSADERSTELRQRRRKRWTRVRPSQPSSSMASPDGGCIESDMDISRENRGISRQVSKPRKLTWGRGGFRSNTRHGSGGGSNSKNSRSSRLSKLVDHLRSLDESTDELDVHLMLVSLDKQSTPSLPQPHLCCRPTLSVKHLCEYVARQTPLPVEAVEILAVKGCCSTNCNKSANENSALIYDELTTLVIDPHKDELEVLQGHESMAGLRSKCISKREHLILAYRLKETS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1903 507 MobiDBLite consensus disorder prediction 228 369 - -
Apr2g1903 507 Pfam Zinc finger, C3HC4 type (RING finger) 129 169 - -
Apr2g1903 507 Coils Coil 43 89 - -
Apr2g1903 507 CDD RING-HC_RING1_like 130 170 - -
Apr2g1903 507 MobiDBLite consensus disorder prediction 9 23 - -
Apr2g1903 507 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 505 - -
Apr2g1903 507 SUPERFAMILY RING/U-box 117 184 - -
Apr2g1903 507 ProSiteProfiles Zinc finger RING-type profile. 130 170 IPR001841 -
Apr2g1903 507 Coils Coil 199 219 - -
Apr2g1903 507 MobiDBLite consensus disorder prediction 319 333 - -
Apr2g1903 507 MobiDBLite consensus disorder prediction 352 367 - -
Apr2g1903 507 MobiDBLite consensus disorder prediction 41 90 - -
Apr2g1903 507 PANTHER OS11G0578200 PROTEIN 1 505 IPR044592 -
Apr2g1903 507 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Apr2g1903 507 SMART ring_2 130 169 IPR001841 -
Apr2g1903 507 MobiDBLite consensus disorder prediction 91 113 - -
Apr2g1903 507 MobiDBLite consensus disorder prediction 1 113 - -
Apr2g1903 507 MobiDBLite consensus disorder prediction 243 261 - -
Apr2g1903 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1903 Apr-Chr2 24527262 24534334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1903 123 193 C3H Transcription Factor Family AT3G23060 35.135 4.36e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1903 K10695 - gmx:100776547 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1903 2 24527262 24534334 Apr2g1903 2 24527262 24534334 ECH