Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1902 ATGAGCAGTGTTTGTGCTGAACAGCACAAGCTTCACCCTTCTCACCGACTCCCTTCACCAAAGAAATCCATTAGGGAAATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGCGCCGCCACATATGACGGCGCCACCGACATATACTCCGACGACACCATCCTGCAAAAGTTCCTCCCTTACAACAATCTTGATTCCGATGACTCTGACTCCGAGGACCCCTACTCCTCCGACCACTTTCGGATGTTCGAATTCAAGGTCCGCCGGTGCACCCGCAGCCGGAGCCACGACTGGACTGACTGCCCTTTTGCCCATCCAGGAGAAAAAGCGCGGCGCCGGGACCCACGGCGATATCATTACTCAGGAACAGTCTGTCCTGAATATCGCCGCGGAGGGTGCAGCCGCGGCGACTCATGCGAATACGCTCACGGCGTGTTCGAATGCTGGCTGCACCCTGCTAGATACAGGACTGAAGCCTGCAAAGATGGCAAGAACTGCAAGCGAAAGGTGTGTTTCTTTGCTCACACCCCTCGGCAGCTCAGAATCTTGCCAGTAACATCGTCTTCATCCACCTCTTCAAACGACAAGAAAAACAAATTCTTGAACCATGCTTCAAGGTCAAACAACAACAATTGTTGTTTGTTCTGCCATGGTGCTGCTTCTTCTGCTTCTCCAACTTCAACGCTTTTTGGCATGTCCCATTACTCGCCACCACTGTCACCATCATCGTCTACCTCGCCGCCTCTTTCGCCGTTTCAACTCAGAAACGGGGTTTCTTCGATTTCTCATTACGGTGTCGAGAATCATTACGGTGTGGAGAACCATCATAATCGTGTGGTGAGTTATAAAGATATGTTAACTGAATTGATGAGTTCTTTGGAGGGTTTGAGTTTCAACGAGGTTTTGAGTTTAAATGAGGGTTCGCAAGTTTCTGCAGCAAAAACACCGAACTTGTCATGGCTTGATGTTCCTCTGAACCGTGAGGATCAGCAACAACAGTTCATTGTTTCGTCCACTACTCAGACATCCACAAGTTCCAATGGCAAGTTTTCTTGCAGCAAATTCTTGGGCAACGACAACAAGGTTGTTGTCGGTCCTGATGGTAATAGCCCAGATCTCGGGTGGGTGAATGAGCTGCTGATGTAA 1146 0.4991 MSSVCAEQHKLHPSHRLPSPKKSIREIDIPPRKLLTRRAATYDGATDIYSDDTILQKFLPYNNLDSDDSDSEDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDSCEYAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSTSSNDKKNKFLNHASRSNNNNCCLFCHGAASSASPTSTLFGMSHYSPPLSPSSSTSPPLSPFQLRNGVSSISHYGVENHYGVENHHNRVVSYKDMLTELMSSLEGLSFNEVLSLNEGSQVSAAKTPNLSWLDVPLNREDQQQQFIVSSTTQTSTSSNGKFSCSKFLGNDNKVVVGPDGNSPDLGWVNELLM* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1902 381 MobiDBLite consensus disorder prediction 9 27 - -
Apr2g1902 381 SMART c3hfinal6 154 177 IPR000571 GO:0046872
Apr2g1902 381 SMART c3hfinal6 119 145 IPR000571 GO:0046872
Apr2g1902 381 Pfam CCCH-type zinc finger 124 144 IPR041367 -
Apr2g1902 381 PANTHER UNKEMPT FAMILY MEMBER 26 380 IPR045234 -
Apr2g1902 381 Gene3D - 118 183 - -
Apr2g1902 381 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 380 - -
Apr2g1902 381 MobiDBLite consensus disorder prediction 1 27 - -
Apr2g1902 381 ProSiteProfiles Zinc finger C3H1-type profile. 120 146 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1902 Apr-Chr2 24522246 24523434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1902 75 248 C2H2 Transcription Factor Family AT5G12850 49.425 2.40e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr2g1902 zf-CCCH 3.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1902 K23047 - gmx:100787049 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1902 2 24522246 24523434 Apr2g1902 2 24522246 24523434 ECH