Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1896 ATGGCTTCGTTATTCAAGGATCCATCGAAGCTTTCAGCGTATCGAGATAGAAGGTTCCCTGGAACGCAAGAGGAGTTTGAGCATGCGCTTATAACTTCAACCACCGTTTACGTCGGAAACATGTCGTTTTACACGACGGAGGAGCAAGTCTACGAACTCTTTTCCCGTGCCGGAGAAATCAAGAAGATTATCATGGGATTGGATAAGAACACAAAAACGCCGTGTGGATTCTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAAGATGCTTGCAAATACATAAGTGGGACGATACTGGATGATCGTCCCATTCGTGTTGATTTTGATTGGGGATTCCAGGATGGAAGACAATGGGGTCGTGGTCGTAGTGGTGGCCAGGTGCGCGATGAATATCGCACTGATTATGATCCTGGCAGAGGTGGTTACGGGAAGTTGGTTCAGAAAGAGTTAGAAGTTCAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGCTCTTTTCCTCCTGTTATTCCATCTTCTTATGGCAGACATGGTGGAGGTCATGGTCATGGTGGTTCCCATCGGCATGGTAGAGATTACTCTAGGAAGAGACACAGAGATGATGACCGTCACACACACGAGCCCTCGAGAAGAACTTCAGATCACGAGTCTCGGAGGAACACAGACCATGAATCTAGACCGGAAAAAAATCCACGATTTCGTGAGAGTGGTGATTCTGATGAGGAGGAGGAAGATGACAGTAGAAAGAGACGGGCTTGA 765 0.4641 MASLFKDPSKLSAYRDRRFPGTQEEFEHALITSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPSSYGRHGGGHGHGGSHRHGRDYSRKRHRDDDRHTHEPSRRTSDHESRRNTDHESRPEKNPRFRESGDSDEEEEDDSRKRRA* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1896 254 CDD RRM_NCBP2 36 113 IPR034148 -
Apr2g1896 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Apr2g1896 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Apr2g1896 254 MobiDBLite consensus disorder prediction 171 254 - -
Apr2g1896 254 Gene3D - 6 150 IPR012677 -
Apr2g1896 254 MobiDBLite consensus disorder prediction 124 138 - -
Apr2g1896 254 SUPERFAMILY RNA-binding domain, RBD 27 144 IPR035979 GO:0003676
Apr2g1896 254 MobiDBLite consensus disorder prediction 120 140 - -
Apr2g1896 254 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 209 - -
Apr2g1896 254 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 209 IPR027157 GO:0000339|GO:0005846|GO:0045292
Apr2g1896 254 SMART rrm1_1 35 108 IPR000504 GO:0003723
Apr2g1896 254 MobiDBLite consensus disorder prediction 197 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1896 Apr-Chr2 24481601 24484568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1896 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 7.17e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1896 K12883 - gmx:100789535 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1896 2 24481601 24484568 Apr2g1896 2 24481601 24484568 ECH