Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1893 ATGCTGGCGGTGTCACCTTTGAGGAGCACACGAGATGAAAGCCAAGGAGAGATGGAGGGTTTCTCTATTGGAACCGATGACTTTGCTGACCTTTCAGAAGGGAACTTGCTTGAAAGTATCAACTTCGATGATCTCTTCATGGGAATCGATGATGAAGAAGATGCCTTGCCGGATCTGGAGATGGACCCTGAAATGCTTGCTGAGTTCTCACTCAGCGGTGGTGAGGAATCTTCGGAGATAAACTCTTCAATTTCAGTGGCAAATAGTAAATCTGATGATGGGAATATAAATGCTACGAATAAAGAAGTTGAAGATCATAAAGCTGCTAATTCTTCTTCAGATTCGGGAACCAATTCTGGGTCAAGTCGAGGGGAAGAGATAGTGAGCAGAAGTGATGAATCAGTGGTGGTGAATCCTTTGCCTAAGGAAAGTGAGAAAGGAAGAAAATCATCGACTCAATCCAAGACCAATCCTCACGGGAAGAGAAAGGTGAAGGTGGATTGGACCCCAGATTTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCCAGCCACCTTCAAAAATATCGTTCGCATAGAAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCAAGCTGGAGTCAACGGAGGCAATGTTTCAGTGCAGCAAGTGTTGGTAGAGGAGGAGGCAAGAGAGATGTGAACCCTTGGCTCGCACCAACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTTAGACCTTTACATGTATGGGGGCATCACACAATGGACCAGTCCTTTATGCATATGTGGCCTAAACACATACCATATTCGCCGTCAGCACCACCACCGTGGCCACCGCGGACAGCTCTATCTCCGCCGCCTCCACCAGATCCTTTATATTGGCACCAACGGGCCCCAAACGTGCCCACCCCAGGAAGACCGTGTTTTCCACAGGGTCTGACAACCACGAGATTTGGGTCTCCAACTGTACCAGGCATCCCACCACACCATGCAATGTACCAAGTAGATCCAGGCATTAGCATCCCAGCAAGCCAACCACCACCTCGGCCCCTCTTCGACTTTCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGCTTTATCAAAACCATGGTTGCCACTGCCACTTGGCCTTAAAGCTCCAGCACTTGATGGTGTAATGGGTGAATTACAAAAACAAGGGATTCCAAAAATTCCACCCTCTTGCGCTTAA 1299 0.4858 MLAVSPLRSTRDESQGEMEGFSIGTDDFADLSEGNLLESINFDDLFMGIDDEEDALPDLEMDPEMLAEFSLSGGEESSEINSSISVANSKSDDGNINATNKEVEDHKAANSSSDSGTNSGSSRGEEIVSRSDESVVVNPLPKESEKGRKSSTQSKTNPHGKRKVKVDWTPDLHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQCFSAASVGRGGGKRDVNPWLAPTMGFPPMTPMHHFRPLHVWGHHTMDQSFMHMWPKHIPYSPSAPPPWPPRTALSPPPPPDPLYWHQRAPNVPTPGRPCFPQGLTTTRFGSPTVPGIPPHHAMYQVDPGISIPASQPPPRPLFDFHPSKESIDAAISDALSKPWLPLPLGLKAPALDGVMGELQKQGIPKIPPSCA* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1893 432 MobiDBLite consensus disorder prediction 110 125 - -
Apr2g1893 432 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 163 217 IPR006447 GO:0003677
Apr2g1893 432 MobiDBLite consensus disorder prediction 74 96 - -
Apr2g1893 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 219 IPR017930 -
Apr2g1893 432 MobiDBLite consensus disorder prediction 53 165 - -
Apr2g1893 432 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 432 - -
Apr2g1893 432 MobiDBLite consensus disorder prediction 1 28 - -
Apr2g1893 432 Gene3D - 160 221 - -
Apr2g1893 432 Pfam Myb-like DNA-binding domain 166 215 IPR001005 -
Apr2g1893 432 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 432 IPR044825 GO:0003700|GO:0045893
Apr2g1893 432 SUPERFAMILY Homeodomain-like 161 220 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1893 Apr-Chr2 24456500 24460753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1893 27 340 G2-like Transcription Factor Family AT5G44190 42.769 3.82e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr2g1893 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1893 - - gmx:100775671 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1893 2 24456500 24460753 Apr2g1893 2 24456500 24460753 ECH