Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1889 ATGACTCAGTGCAGTTACCCTGAAAGCAATCATAGCATCATTGTGGAGAGGCACAAAGACAGCTTAATTAGAACATGTCCTACATGTGGTCATCATATCAAATGCCAAGAGCAGGTTGGTGGAATTCATGACTTACCTGGACTACCTGCTGGAGTGAAGTTTGATCCCACTGATCAGGAGATTCTTGAACATTTGGAAGCAAAAGTGCGGTCTGATATTCACAAGCTTCACCCGTTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTGCCAGGAGTGAGCAAAGATGGCCTGATCCGTCATTTCTTTCACCGGCCTTCCAAGGCATACACGACAGGAACAAGGAAAAGGAGAAAAGTGCACACAGATGCTGATGGCAGTGATACCCGATGGCACAAAACAGGTAAGACTAGGCCAGTCTACATTGGTGGCAAGTTAAAAGGGTACAAGAAAATTCTTGTGCTTTACACAAACTACAGAAAACAAAGGAAGCCGGAGAAAACAAATTGGGTTATGCACCAGTACCACCTTGGCAATAATGAAGAGGAGAAGGAAGGGGAATTGGTGGTCTCAAAAGTTTTCTACCAAACACAACCTAGACAATGTAGTTCAACGATGAAAGACTCATATCCTGCAAAACTAAACGGTCAAGGCATGCATGAGGTAACTAACAAAAACATTGGGTTTGGTGAGTATTACAACACTTCTTTCATATCATTTGATCAAGGAGACCAACATAGATCTACCAATGCTCAAGTAGTTTCCCATTTTCCTGTCCATGATGCTACTTTCATTTCTTGA 834 0.4257 MTQCSYPESNHSIIVERHKDSLIRTCPTCGHHIKCQEQVGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSDTRWHKTGKTRPVYIGGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCSSTMKDSYPAKLNGQGMHEVTNKNIGFGEYYNTSFISFDQGDQHRSTNAQVVSHFPVHDATFIS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1889 277 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Apr2g1889 277 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
Apr2g1889 277 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 276 - -
Apr2g1889 277 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
Apr2g1889 277 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 276 IPR044799 GO:0003700
Apr2g1889 277 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Apr2g1889 277 MobiDBLite consensus disorder prediction 127 142 - -
Apr2g1889 277 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1889 Apr-Chr2 24416680 24418974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1889 24 224 NAC Transcription Factor Family AT4G28500 79.208 4.32e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g1889 NAM 4.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1889 - - gmx:100791648 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1889 2 24416680 24418974 Apr2g1889 2 24416680 24418974 ECH