Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1887 ATGGATGATGGAGAAATTTCAAATGCTTTCCCTCCCCAGAACCCATCAACTGCTTCATCTAACAATCCTCCAGTTTTGAAAAGAAAGAGAAACCTCCCTGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACTCTGATGGCTACCAACAGGTTCGTGTGTGAAATTTGTCTGAAGGGTTTCCAAAGGGACCAAAATCTTCAACTCCATAGACGAGGGCATAACCTTCCTTGGAAGCTGAAGCAAAGGACAAGCAAAGAAGTGAGGAAGAGAGTTTATGTGTGTCCAGAGAAGACATGTGTTCACCACCATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATTAAAAAACACTTTTGCAGAAAGCACGGGGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAATCAGATTGGAAAGCACACTCAAAGACCTGTGGCACCAGAGAATACAAATGTGACTGTGGGACTATCTTTTCACGAGTCTTACTAGAGAAATTCTTAAGAACTCACGGGACAACAAATAAAATTGTATGTACTGCCTTAATTGTGCCTTTAACTTCAACTCTTTTTAAAAGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGCGATGCCTTGGCAGAAGAAACAGCAAGGGTGAACGCAGCTTCAAACATGAGCAGCTACAGCATCATGCAAAACTCCCTTGGTCCTAACATGGCAACCCACTTTTCATCAATTTTCAAGGCAATTTCATGTACTGAGGAACCAAGTAATCAAACATCCAATAAGGGGCTATCTCTTTGGATGACTCAAACGTCATCTCAGGCTCATGAGACAATGGCTAATAACAATTTGCATGAATTTCATCAACTTGGGTCTGCTACAAGCTCAACAGCAATTTATTGTAGTGGTGGGAATCCACTTGTTTCTTCATGCTCAAATCCACCACCCTCTAATTATCAGCTAAATTGGGTGCAGTTTGGAAGTAAACTATCTTCTAATGGAAGTGATCAAGAGCTAACAAGCACTGTTTCACTTCCTCTAGTGAATAATATTGTTAAGGATAATCCAAACCAGCTTATAAGTGTTCCTTCCTTGTATAGCTCCCAACACCAATCCCATCAAACAACATCAGCAAACATGTCAGCCACAGCTTTGCTGCAAAAAGCTGCTCAAATTGGGACAACTTCATCGGACCCATCATTATTCCTTGGGAGCTTAGGTTTGAAATGCAATACTCCAGGACAAGATGGGAACAAATTTTGTGCCATGTACGGTTCAAGTTCAGTACTCACAAGTCATGGTACTGAGGCAGAGAATAATTATTCAGGTGATTTGTCACAAATGCCCCCTACAAAACGACGGCACGTACAGAATACTGAAGAGACTGCATGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGTTGCGAATCATTTGCCACCCTACATCAATCAACGGATGGATTTGTTTTGA 1485 0.4236 MDDGEISNAFPPQNPSTASSNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRVLLEKFLRTHGTTNKIVCTALIVPLTSTLFKRRDSFITHRAFCDALAEETARVNAASNMSSYSIMQNSLGPNMATHFSSIFKAISCTEEPSNQTSNKGLSLWMTQTSSQAHETMANNNLHEFHQLGSATSSTAIYCSGGNPLVSSCSNPPPSNYQLNWVQFGSKLSSNGSDQELTSTVSLPLVNNIVKDNPNQLISVPSLYSSQHQSHQTTSANMSATALLQKAAQIGTTSSDPSLFLGSLGLKCNTPGQDGNKFCAMYGSSSVLTSHGTEAENNYSGDLSQMPPTKRRHVQNTEETAWGQTRDFLGVGVANHLPPYINQRMDLF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1887 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 196 492 - -
Apr2g1887 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 170 - -
Apr2g1887 494 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Apr2g1887 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Apr2g1887 494 Gene3D Classic Zinc Finger 53 154 - -
Apr2g1887 494 MobiDBLite consensus disorder prediction 1 38 - -
Apr2g1887 494 PANTHER F-BOX ASSOCIATED PROTEIN 196 492 - -
Apr2g1887 494 PANTHER F-BOX ASSOCIATED PROTEIN 1 170 - -
Apr2g1887 494 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Apr2g1887 494 MobiDBLite consensus disorder prediction 9 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1887 Apr-Chr2 24406723 24410005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1887 22 479 IDZ Gene Family AT1G03840 50.099 4.07e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g1887 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1887 K25870 - gmx:100778666 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1887 2 24406723 24410005 Apr2g1887 2 24406723 24410005 ECH