Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1877 ATGAGTTACTTCGATGATGATCATGAGCATGGCCCATTAGGCAATTTCCATGACCACAGCGAGTTCAACAAGAGGATATTACTAGTGGCTATAGTTTCCTTAACAGTGGTTTTAGTTTTGGTGTTCGCACTTCACCTCTATGCAAGGTTGGTTCTCAAACGTCAAGCTCGGCGCCGAGCCGCCATTTACCAACTAAGCCTCACTGTGGCTCAAGCTCAATCTCCCGAACCACCCAACACAGGACTCGACCCTACCCTCATCAACGCTCTTCCTGTTTCCCCCTTCAAACAACAACAACAACATGTTTTGGAGTGTGCCGTGTGTTTGAGTGTTCTAGAAGATGGAGAAATGCTAAGGTTGCTTCCCAATTGTAAACATAGTTTCCATGTGGCTTGCATCGACACGTGGCTCGCTTCGCACTCTACGTGTCCCATTTGTCGAACCAAAGCCGAACCCCTCCGACTTGAGCCGCAGCCACGTGAGGGTCCGGCTCATGGTGTACCACCCTCGGCTCCACTCTTGTTTGAACCCATCGAAGGCACTTCCGATGGTACTCTTAATGGGTCGCCTAAAATCAATGCTTCTAATTCGCGGTTGAGCTCGTTCAGAAGGATTCTTAGTAGAGAGAGATCGTCGAGGAGAATCCAACCTTCCACCCATGATGATGATATTGATCAAGATTTAGAGAGGCAGTGA 696 0.4856 MSYFDDDHEHGPLGNFHDHSEFNKRILLVAIVSLTVVLVLVFALHLYARLVLKRQARRRAAIYQLSLTVAQAQSPEPPNTGLDPTLINALPVSPFKQQQQHVLECAVCLSVLEDGEMLRLLPNCKHSFHVACIDTWLASHSTCPICRTKAEPLRLEPQPREGPAHGVPPSAPLLFEPIEGTSDGTLNGSPKINASNSRLSSFRRILSRERSSRRIQPSTHDDDIDQDLERQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1877 231 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Apr2g1877 231 CDD RING-H2_PA-TM-RING 104 147 - -
Apr2g1877 231 PANTHER RING FINGER DOMAIN-CONTAINING 18 231 - -
Apr2g1877 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 152 IPR013083 -
Apr2g1877 231 SUPERFAMILY RING/U-box 104 153 - -
Apr2g1877 231 MobiDBLite consensus disorder prediction 207 231 - -
Apr2g1877 231 Pfam Ring finger domain 104 147 IPR001841 -
Apr2g1877 231 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 18 231 - -
Apr2g1877 231 SMART ring_2 105 146 IPR001841 -
Apr2g1877 231 MobiDBLite consensus disorder prediction 156 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1877 Apr-Chr2 24326959 24328781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1877 3 231 C3H Transcription Factor Family AT2G42360 44.958 1.06e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1877 K19038 - gmx:100780265 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1877 2 24326959 24328781 Apr2g1877 2 24326959 24328781 ECH