Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1865 ATGGAAATGGAAGCTTTTGCTTTTCCAGTTAGTTCTGGTGTAATTGGAAGTGGGTATACTTCTTCTTCATCTTTGATTTTGGATAAGGAGAAGGGAGAGCTTGTAGAGGCCCCTGTCAAATTGGAACGCAAGGTCGTGTCCCCTGAGAGAAGTATTGAAGCCTTGAAGAACCATAGTGAGGCAGAAAGGAGAAGGAGGGCAAGAATTAATGCACATCTTGATACACTTCGCAGTGTCATTCCAGGTGCTAATAAGTTGGACAAAGCATCCTTATTGGCTGAGGTTATTAGACATTTGAAAGAGCTGAAAACGAACGCAGCAAAAGCTAGTGAAGGCTTAATGATACCAAAGGACAATGATGAAATTAGAGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTCCCTTACTCAATTAGGGCATCACTATGTTGTGAATATAAACCAGGGTTGTTGTCTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCAGAGATTGCAACATTGGGAGGTAGGATGAACAATGTCTTTGTGATAATTAGCTGCAAAGAACAGAAATTTGAAGATGCTGAATCCCGTCAGTTTCTGGCTGGATCTGTTCACCAAGCTCTTAGATCAGTACTAGATAGATTTTCTGTTTCACAGGACATGTTAGAATCCAGAAAGAGAAGGAGGGTTTCTATATTCAGTTCATCATCTTTAGGAGATTTCTTGTGA 729 0.4033 MEMEAFAFPVSSGVIGSGYTSSSSLILDKEKGELVEAPVKLERKVVSPERSIEALKNHSEAERRRRARINAHLDTLRSVIPGANKLDKASLLAEVIRHLKELKTNAAKASEGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIIRAEIATLGGRMNNVFVIISCKEQKFEDAESRQFLAGSVHQALRSVLDRFSVSQDMLESRKRRRVSIFSSSSLGDFL* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1865 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Apr2g1865 242 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 242 - -
Apr2g1865 242 SUPERFAMILY ACT-like 141 221 IPR045865 -
Apr2g1865 242 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Apr2g1865 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 110 IPR036638 GO:0046983
Apr2g1865 242 PANTHER TRANSCRIPTION FACTOR BHLH30 5 242 IPR045847 GO:0003700|GO:0006355
Apr2g1865 242 Gene3D - 49 111 IPR036638 GO:0046983
Apr2g1865 242 SMART finulus 59 108 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1865 Apr-Chr2 24226690 24228387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1865 40 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.306 1.58e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g1865 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1865 - - lja:Lj3g3v2848980.1 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1865 2 24226690 24228387 Apr2g1865 2 24226690 24228387 ECH