Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1850 ATGTCAGGAGCAGGACCTGTCTCGCAGGATTGGGAACCAGTGGTGCTCCGCAAGAAAGCTCCCACCGCCGCCGCCCGCAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCACCGGCGCCGAAATCGATACCATCAAAAAATATAATGCTGGAATGAACAAATCTGCTTCTAGTAGCACTTCATTGAATACTAAGAGGTTGGATGATGATACAGAGAATCTATCTCATGATCGGGTACCAACTGAACTCAAGAAAGCTATAATGCAGGCTCGGATGGACAAGAAACTTACACAGTCTCAGCTTGCTCAACTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAAGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGTGCCAAACTGCGTGGCAAGAAATAA 429 0.4942 MSGAGPVSQDWEPVVLRKKAPTAAARKDEKAVNAARRTGAEIDTIKKYNAGMNKSASSSTSLNTKRLDDDTENLSHDRVPTELKKAIMQARMDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1850 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Apr2g1850 142 CDD HTH_XRE 85 135 IPR001387 -
Apr2g1850 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Apr2g1850 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Apr2g1850 142 Coils Coil 87 107 - -
Apr2g1850 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Apr2g1850 142 MobiDBLite consensus disorder prediction 50 78 - -
Apr2g1850 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Apr2g1850 142 MobiDBLite consensus disorder prediction 1 32 - -
Apr2g1850 142 Gene3D - 71 142 IPR010982 GO:0003677
Apr2g1850 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Apr2g1850 142 SMART mbf_short4 86 141 IPR001387 -
Apr2g1850 142 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1850 Apr-Chr2 24076991 24078959 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Apr2g1850 MBF1 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1850 K03627 - gmx:100500420 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1850 2 24076991 24078959 Apr2g1850 2 24076991 24078959 ECH
Apr2g1850 2 24076991 24078959 Apr3g0971 3 24602876 24605575 PCT