Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1842 ATGCCTTTTCATATCACTGCTAAGTTACTCTCTTGGAGATCATTCCTCCTGCTACCGTTTAGGGCCCTGCTGGGTCGTCGCTCTTCGTCCCATTTCACCCCATTGGGCGACAGTGAAACAGCTGAAACTCAGGGGATATGTAAATACGATGTGTTTATCAGTTTCAGAGGTTCCGACACACGCAACACTTTTGTTGATCATCTTTACCATCATCTCATCAGAAAGGGCATTTTCGTCTTCAAGGATGACACACAGCTCCACAAAGGACAACTCATTTCACCGCAGCTTGTACAAGCAATTAAAAACTCAAGAGTTTCTATTGTTGTTTTTTCTAAAGATTATGCTTCCTCGTCATGGTGTTTGGATGAAATGGCTACTATTGCTGAATGCCATCAACAATTCAAACAAATTGTTTTCCCTGTTTTCTATGATGTCGATCCATCTCACGTGCGAAACCAGAGTGGGGTGTACGAGGATGCCTTTGTTCTACACACAGAGAAGTACAACCATGATCCAGCCAAGGTTGGTCTATGGAAGAGAGCTATGACGGGCTTTGGTAGATCAGTTGGTTGGGATGTCAGGAATAAGCCGGAGTTTGGAGAGATTAAAAAACTTGTTCAAGCGGTGATAGAATCATTGGGTCATAAATTCTCAGGGTTCGCTGATGACCTTATTGGGATACAAACTCGCGTCGAAGCATTAGAAAGAATTTTAAAATTACACTCAAAGAATGATGATTTTCGAGTTTTAGGAATTTGGGGGATGGGTGGAATTGGAAAGACAACTCATGCTACTGTCTTATATGATAAAATTTCTTATCAATTTGACGCCTGTTGTTTTATTGAGGATGTAAGGCAAATTTATAAAGATGGTGGTGCTATTGCTGTACAGAAACAAATTCTTTATCAAACTCTAGACGAAGTAAATCTAGAGGAATACAGTCCTTCCGAAATATCTGGAATCATACGAAATAGGCTACACAACATAAAGGTTCTTCTAGTTCTTGACAATGTTGATCAATTAGAACAACTGCAAGAAATGGCTATAGATCCTAAATTGCTTCACACAGGAAGTAGAATGGTCATTACCACTAGAGATGAGCATATTCTAAAAGTGTATGGAGCGAATGTAGTGTACAATGTTCCACTATTGAATGATAGTGATGCTTGCCAACTCTTTTATAAGAAAGCCTTCAAAATTGATGATCCCACCAACAGGCATATGGAGATGATTCCGAAGGTACTCAAGTATACTGAACGTCTTCCGTTAGCAATTAGAGTAGTGGGTTCTTTCTTGTGTACCCGAGATGCTATCCAATGGAGAGATGCCTTGGATAGGCTGAGGAGTAATCCAGACAACAAAATTATGAATGTGCTTCAAATGAGTTTTGAGGGATTACAGCCAGAGGAAAAAGAAATATTTCTGCACATTGCTTGTTTCTTTAATGGGGAGAAGAAGGATTATGTAAAGCGAATTCTACATGCTTGTGGATTACACCCTCACATTGGAATTCCAGTTATCACTGAGAAATCACTCATAAACATTAGAAACCGGGAAATTCATATGCATGAAATGTTGCAAGAATTGGGAAAGGAAATTGTTCGGCAACAATTTCCCAAAGATCCAGGGTCGTGGAGTAGGCTTTGGCTTTACCAAGATTTTCAAGATGTCTTGATGACAGGAACGGGAACAAACAAGGTTAAAGCCATAGTTGTAGATAAAAAAAAGGATATCCCTGAGTACTATCAGTTGAGGGCTGAAGGATTGTCTATAATGAGGGGCCTTATAATTCTTATACTATATGATAAGAATTTTTCTGGAAGCCTTAATTTTCTTTCTAACAGTCTGAAGTATCTTCTGTGGCATGGTTACCCTTTTACTTCTTTGCCTTTAAATTTTGAGCCCTATCATCTTGTTGAACTGAATTTGCCCAATAGCAACATCCGGCAACTATGGCAAGGCTTCAAGTATCTCCCCTGTTTGAAAAGGTTGGATCTAAGCAAGTCCAAATATCTTTTTGAGACGCCAAATTTTGAAGGATGCCGAAGACTTGAATGGCTAGATCTCACTGGATGCACAAATCTACTGCGGGTCCATCCATCAATTGGACTTCTTGAAAAACTTGATTTTTTGAGTTTGGAAGGGTGTAGCAATCTGGCCAGCCTGAACATTGGCACTGAATTTAATTTATGTTCTCTGAGAGTTCTACACCTCTCTGGCTGCGTAGCACTTGAAAGCACGCCAGATTTTACAGAATTCTCAAATCTCGAGTACCTTGACATTGATCAATGTATGAGTTTAGCATTGATTGATCAATCTATTGGGAATCTTACAAAACTTAAATTCTTGAGTTTGAGAGACTGCATAAATGTTTTTAGTATACCCCAAAGCGTGAATAGTATGACATCGCTTATAACTCTAGATTTATGCGGCTGCTTAAAACTTGAGAAGCTTCCCTTGTTGGGACAGATATCTGTGTCTGCAGAACTCATGCCTTCTCAATGTCTGGAATACTTGATTTTTTTGGACCTAGGCTTCTGCAACCTAAATATAGTCTCCAATGGTATTGGAGACTTAATGTGTCTAGAAAGGCTAAATCTAGAGGGTAACAACTTTGTTACATTACCACATATGGGTAGGCTTTCGCGTCTGGCATATTTAAACATAGCGCACTGCAACAATCTTCAAGTTTTACCTGCGCTTCCTCATGCTACTTCATTAGGGGGAAGGTATTTTAAAACGGTATCTGGATCTCATAATCATAGGTCAGGCTTATATATTTTTGATTGTCCCTTTTTCGACTATCTAAAACAAAGTCAAGACTTGGGTTTTTGGTGGCTACAAAGACTTGTTAAGAATCCTTGTCATTTCCGATGCGGCTTTGACATTGTCATACCTGGGAATGAAGTTCCACCGTGGTTTTCCCATCAATATATGGGAGGTTTAAGCGTAAGGGTAGCAAACATTATGAACGATCAGTGGCTTGGCGTTGCCTTTTGTGCAGCTTTTGAAAAATATGATCATCCCATAATGGGTTCTTCACCTCTTTTTTATCTTTCTTTTGAAAGTGAACACGTGGAAGAAAGCCTTTACATGCCACTTCGTTTAGACCTGAACAAGGTAGATGGCTTACATTCAAAACATCTTTGGCTAATCTATATATCTCGGCCACACTGCCACTTTGTGACAACAGGAGCATCCATCTCATTTAAAGCTCAACCAGGTTTGAAGATAAAAGAATGGGGCTTACGCATGGTATTCGAGCAAGATGTCTTTGATCCAAATTTTATTGATCCAGTAGATGGTTTTTGTTATGATTATGCACATGAAAGTAGCAGCAGCACTGGGCCTAAAATCCAGCTTCCCTATAATTGGTTGCTTACTGAGGATGTGCATGGAAGCAGCAGCAACTCTGAGTCTAAATTACAGCTTCCCTATAATTGGTTTGTTACTGAGGAAGAAGAAAATGAGACTATTGAAGTGAATGCAAAAGAAAATAATCTCTCTAGTATGGGCCTTTCCACACGCCAATCACTGTGA 3540 0.3952 MPFHITAKLLSWRSFLLLPFRALLGRRSSSHFTPLGDSETAETQGICKYDVFISFRGSDTRNTFVDHLYHHLIRKGIFVFKDDTQLHKGQLISPQLVQAIKNSRVSIVVFSKDYASSSWCLDEMATIAECHQQFKQIVFPVFYDVDPSHVRNQSGVYEDAFVLHTEKYNHDPAKVGLWKRAMTGFGRSVGWDVRNKPEFGEIKKLVQAVIESLGHKFSGFADDLIGIQTRVEALERILKLHSKNDDFRVLGIWGMGGIGKTTHATVLYDKISYQFDACCFIEDVRQIYKDGGAIAVQKQILYQTLDEVNLEEYSPSEISGIIRNRLHNIKVLLVLDNVDQLEQLQEMAIDPKLLHTGSRMVITTRDEHILKVYGANVVYNVPLLNDSDACQLFYKKAFKIDDPTNRHMEMIPKVLKYTERLPLAIRVVGSFLCTRDAIQWRDALDRLRSNPDNKIMNVLQMSFEGLQPEEKEIFLHIACFFNGEKKDYVKRILHACGLHPHIGIPVITEKSLINIRNREIHMHEMLQELGKEIVRQQFPKDPGSWSRLWLYQDFQDVLMTGTGTNKVKAIVVDKKKDIPEYYQLRAEGLSIMRGLIILILYDKNFSGSLNFLSNSLKYLLWHGYPFTSLPLNFEPYHLVELNLPNSNIRQLWQGFKYLPCLKRLDLSKSKYLFETPNFEGCRRLEWLDLTGCTNLLRVHPSIGLLEKLDFLSLEGCSNLASLNIGTEFNLCSLRVLHLSGCVALESTPDFTEFSNLEYLDIDQCMSLALIDQSIGNLTKLKFLSLRDCINVFSIPQSVNSMTSLITLDLCGCLKLEKLPLLGQISVSAELMPSQCLEYLIFLDLGFCNLNIVSNGIGDLMCLERLNLEGNNFVTLPHMGRLSRLAYLNIAHCNNLQVLPALPHATSLGGRYFKTVSGSHNHRSGLYIFDCPFFDYLKQSQDLGFWWLQRLVKNPCHFRCGFDIVIPGNEVPPWFSHQYMGGLSVRVANIMNDQWLGVAFCAAFEKYDHPIMGSSPLFYLSFESEHVEESLYMPLRLDLNKVDGLHSKHLWLIYISRPHCHFVTTGASISFKAQPGLKIKEWGLRMVFEQDVFDPNFIDPVDGFCYDYAHESSSSTGPKIQLPYNWLLTEDVHGSSSNSESKLQLPYNWFVTEEEENETIEVNAKENNLSSMGLSTRQSL* 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1842 1179 SUPERFAMILY Toll/Interleukin receptor TIR domain 47 191 IPR035897 -
Apr2g1842 1179 Pfam C-JID domain 965 1091 IPR045344 -
Apr2g1842 1179 Gene3D Ribonuclease Inhibitor 577 723 IPR032675 -
Apr2g1842 1179 Gene3D - 46 219 IPR035897 -
Apr2g1842 1179 SUPERFAMILY "Winged helix" DNA-binding domain 453 558 IPR036390 -
Apr2g1842 1179 Gene3D - 383 467 IPR042197 -
Apr2g1842 1179 ProSiteProfiles TIR domain profile. 47 213 IPR000157 GO:0007165
Apr2g1842 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 477 IPR027417 -
Apr2g1842 1179 Gene3D - 221 378 IPR027417 -
Apr2g1842 1179 Pfam Leucine Rich Repeat 637 654 IPR011713 -
Apr2g1842 1179 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 748 818 - -
Apr2g1842 1179 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 41 745 - -
Apr2g1842 1179 SUPERFAMILY L domain-like 589 938 - -
Apr2g1842 1179 PRINTS Disease resistance protein signature 249 264 - -
Apr2g1842 1179 PRINTS Disease resistance protein signature 325 339 - -
Apr2g1842 1179 PRINTS Disease resistance protein signature 418 432 - -
Apr2g1842 1179 PRINTS Disease resistance protein signature 656 672 - -
Apr2g1842 1179 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 748 818 IPR044974 GO:0006952
Apr2g1842 1179 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 745 IPR044974 GO:0006952
Apr2g1842 1179 Pfam NB-ARC domain 233 455 IPR002182 GO:0043531
Apr2g1842 1179 Gene3D Ribonuclease Inhibitor 825 952 IPR032675 -
Apr2g1842 1179 Gene3D Ribonuclease Inhibitor 728 824 IPR032675 -
Apr2g1842 1179 Pfam TIR domain 48 215 IPR000157 GO:0007165
Apr2g1842 1179 SMART till_3 48 188 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1842 Apr-Chr2 24009426 24014501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1842 49 865 WRKY Transcription Factor Family AT4G12020 30.263 4.63e-84 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1842 - - mtr:MTR_2g083520 1440.63