Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1838 ATGTTTGTCTCTTGGATATCCTCGTTCTTGAAGCTATTTTGGGCCCTATTGGGTCGTCGATCATCCTCCAATCTTAGCCCGTTGGGCCCGGGAAGTACAGCATCAAGTTCTTCCAAGTTTTCCAATAGCTTTCAAAACTATAGACACGATGTATTCATCAATTTCCGAGGGGTTGACACCCGCAACACTTTTGTCGATCATTTGTATGCTCATTTCATTAGAAAAGGTATTTTTGTCTTTAAAGATGACAAAAAGCTCCAAAAAGGAAAATCCACTTTACCACAGCTTATAAAAGCAATTACAGAATCACGGGTTTCTATCATTATCTTTTCAAAAGATTATGCTGCCTCAACATGGTGTTTGGATGAAATGGCTGCTATTGCTGATTGCCAACAACATTTAAAGCAAATCGTTTACCCTATTTTCTATGATGTGGATCCATCTGATGTAAGATATCAAAATGGGGTGTACGAGGATGCTTTTGTTTCACACAGACGCAAGTTCAAACATGATCCGGACAAGGTTCACCGATGGGAGAGAGCTATGACGGGTTTGGCCAGTTCAGTTGGTTGGGATGTCAGGAATAAGCCAGAGTTCGAAGAGATTGAAAAAATTGTTCAAGCGGTAATAAAAATATTGGGTCATAAATTCTCAGGATTTGCTGATGACCTTATTGGCATGCAACCGCGTGTACAAACATTAGAAAGCATTTTAAAGTTAAGCTCAGAGAAGGACGATATTCGAGTTCTAGGAATTTGGGGAATGGGTGGAATAGGGAAGACAACTCATGTTACTGTTCTATATGATAAAATCTCTTATAAGTTTGATGCTTGCTGTTTCATTGAGAATGTGAGCAAAATTTATAAGGATGGTGGAATTGTTGCTATACAAAAACAAATTCTTCGTCAAACATTAGATGAGAAAAATTTAGAAATTAGCCCTAGTGAAATATCAGGAATGGTAAAATACAGGCTTCATAACATAAAAGTTCTTATAGTTCTTGACAATGTTGACCAATTAGAGCAATTGCAAGAATTGGCCATAAATCCTAAATTGCTTTTCCTAGGAAGTAGAATGATTGTTACCACCAGGGATAAGCATATTCTAAATGTCTATGGAGCCAATGTAATCCACGAGATCTCGTTATTAAATGATAATGATGCTCGTGAACTATTTTATAAAAAAGCCTTCAAAAATGAGGACCAAAGCAGTAGTTGTGTAGAGTTGATCCCTGAGGTATTAAAATATGCCCAATGTCTTCCACTAGCAATTAGGGTAGTGGGTTCTTTCTTGTGTACTCGAGATGCTACCCAATGGAGAGATGCCTTGGATAGACTCGAGAATAATCCACATAATAAAGTTATGAATGTACTTCAAATAAGTGTTGATGGACTACAATATGAAGAAAGAGAAATATTTATACACATTGCTTGTTTCTTTAAAGGGGAGAGGGAGGACTATGTCAAGCGAATTCTTGATTGTTGTGGATTATATCCTCACATTGGAATTTCAAGAATCATTGAAAAATCACTCATAACTATTAGAGATCAAGAAATTCATATGCATGAAATGTTACAAGAATTGGGGAAGAAAATTGTTCGTGATCAACATCCTGATGAGCCAGGACTATGGAGTAGATTATGGCTTTATCAAGATTTCTTTCACGTCTTAATGACAGAAACGGGAACAGATAATGTTAAAGCCATAGTTGTAGATCAGAAAGAAGATGACTCCGAGTCCGAATGTAGGGTGGATGGACTGTCAAAAATGAAGAACCTTAGATTACTGATATTATATCATAAAAAATTTTCAGGAAGCCTCAATTTTCTTTCTCAAAAGCTGCGATATCTTATGTGGCATGGTTATCCCTTTCCTTCTTTGCCATCATTTTTTACAGCCTTTGGTCTTGTGGAGTTGAATATGCCTGATAGTAACATCGAACGTGTTTGGGAAGGTTGCAAGAATTTCCCCTGTTTGAAAAGGATGGATTTGAGCAACTCCAAATATCTTATAGAGGGTCCAAATTTTTCTGGGGTCCCCAAACTTGAGCGGCTAGATCTTTCAGGATGCACAGATTTATTACAGCTCCATCCATCAATTGGACTTCTTGAAAAACTTGCTTTCTTGAGTTTACGAAATTGTAGCAATCTAGAAAGCGTCAATTTTGGCAGTGTATCTAATCTATGTTCTTTGAGAGTTCTACACCTCTCTGGTTGCACTAAACTTGAAAACACGCCAGATTTTGCAAGTGCAATAAATCTTGAGTACCTTGATATTGATGGATGTACAAGTTTGTCCATGGTTCATGAATCTATTGGAGCTCTTGCAAAGCTTACATTTTTGAGTTTGAGAGAATGCAAAAATCTTGTTAATGTAACTAACAACATTGATACCATGATATCTCTTAAAACTCTAGATTTATATGGCTGTTTGAAACTTATGAATCTGCCCCTGGGACAAACTTTCAATTCTTCATCCCATTTGGAATTCTTGATATTTTTGGACATTGGGTTTTGCAGTCTACTTGAAGTACCTGATGCTATTGGAGAATTAAGGTGTTTAGAAAGATTGAATCTAGAAGGAAACAATTTTGTTTCACTGCCTTATTCTATCAAGGGGCTACATTGTCTAGCATATTTAAATTTGTCTCATTGCCATGAGCTTAATGTTTTGCCTGAGCTTCCATCAAGTAGTGCTTCATCAGTGGGAAGGTATTTTAAAACGGTATCTGGATCACATGATCATAGGTCAGGGTTATATGTTTTTGATTGTCCCAAGGTGGCCAATATGTTGTCCAAGAATTGGAATTGGATGTCACCATGCAAAGACTTAGAACTTATATGGCTAGTGAGACTAATTGAGGAACCCTTTCATTTTCGGTGTGGCTTTGACATTGTTGTTCCGTGGGGTTGGAAAAATATTCCACGGTGGTTCGACAAAGGATTTAAGGGTGGTTCAGTTATAAGGATAAAGCACTTTAATATGGTTGACAATTGGATTGGCTTTACCTTTTGTGTTGTATTTGAGAAAATAGCTGCAATAACTCTGGGCCCAAAATCCACCTTCCTTACAATTGGTTGGTCACAGAGGAAGATGAAGTTGAGAATACTGAAGCAAAGGCAAAAGAAAATAATCTCTCCAATGCTGGGCTTTAAATACTCTACCCGCAATATGGAAGCTCATAATCATCTTTTTCTCACCCAAGCTAAGTCCCACAGGCTTATGTGA 3228 0.3733 MFVSWISSFLKLFWALLGRRSSSNLSPLGPGSTASSSSKFSNSFQNYRHDVFINFRGVDTRNTFVDHLYAHFIRKGIFVFKDDKKLQKGKSTLPQLIKAITESRVSIIIFSKDYAASTWCLDEMAAIADCQQHLKQIVYPIFYDVDPSDVRYQNGVYEDAFVSHRRKFKHDPDKVHRWERAMTGLASSVGWDVRNKPEFEEIEKIVQAVIKILGHKFSGFADDLIGMQPRVQTLESILKLSSEKDDIRVLGIWGMGGIGKTTHVTVLYDKISYKFDACCFIENVSKIYKDGGIVAIQKQILRQTLDEKNLEISPSEISGMVKYRLHNIKVLIVLDNVDQLEQLQELAINPKLLFLGSRMIVTTRDKHILNVYGANVIHEISLLNDNDARELFYKKAFKNEDQSSSCVELIPEVLKYAQCLPLAIRVVGSFLCTRDATQWRDALDRLENNPHNKVMNVLQISVDGLQYEEREIFIHIACFFKGEREDYVKRILDCCGLYPHIGISRIIEKSLITIRDQEIHMHEMLQELGKKIVRDQHPDEPGLWSRLWLYQDFFHVLMTETGTDNVKAIVVDQKEDDSESECRVDGLSKMKNLRLLILYHKKFSGSLNFLSQKLRYLMWHGYPFPSLPSFFTAFGLVELNMPDSNIERVWEGCKNFPCLKRMDLSNSKYLIEGPNFSGVPKLERLDLSGCTDLLQLHPSIGLLEKLAFLSLRNCSNLESVNFGSVSNLCSLRVLHLSGCTKLENTPDFASAINLEYLDIDGCTSLSMVHESIGALAKLTFLSLRECKNLVNVTNNIDTMISLKTLDLYGCLKLMNLPLGQTFNSSSHLEFLIFLDIGFCSLLEVPDAIGELRCLERLNLEGNNFVSLPYSIKGLHCLAYLNLSHCHELNVLPELPSSSASSVGRYFKTVSGSHDHRSGLYVFDCPKVANMLSKNWNWMSPCKDLELIWLVRLIEEPFHFRCGFDIVVPWGWKNIPRWFDKGFKGGSVIRIKHFNMVDNWIGFTFCVVFEKIAAITLGPKSTFLTIGWSQRKMKLRILKQRQKKIISPMLGFKYSTRNMEAHNHLFLTQAKSHRLM* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1838 1075 Pfam NB-ARC domain 233 462 IPR002182 GO:0043531
Apr2g1838 1075 ProSiteProfiles TIR domain profile. 47 213 IPR000157 GO:0007165
Apr2g1838 1075 SMART till_3 48 188 IPR000157 GO:0007165
Apr2g1838 1075 Gene3D - 382 466 IPR042197 -
Apr2g1838 1075 Gene3D Ribonuclease Inhibitor 579 749 IPR032675 -
Apr2g1838 1075 Gene3D Ribonuclease Inhibitor 750 821 IPR032675 -
Apr2g1838 1075 SUPERFAMILY Toll/Interleukin receptor TIR domain 43 191 IPR035897 -
Apr2g1838 1075 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 908 IPR044974 GO:0006952
Apr2g1838 1075 Gene3D Ribonuclease Inhibitor 822 904 IPR032675 -
Apr2g1838 1075 PRINTS Disease resistance protein signature 249 264 - -
Apr2g1838 1075 PRINTS Disease resistance protein signature 324 338 - -
Apr2g1838 1075 PRINTS Disease resistance protein signature 417 431 - -
Apr2g1838 1075 PRINTS Disease resistance protein signature 677 693 - -
Apr2g1838 1075 Gene3D - 220 377 IPR027417 -
Apr2g1838 1075 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 42 908 - -
Apr2g1838 1075 Gene3D - 43 218 IPR035897 -
Apr2g1838 1075 Pfam TIR domain 49 211 IPR000157 GO:0007165
Apr2g1838 1075 Pfam Leucine Rich Repeat 636 652 IPR011713 -
Apr2g1838 1075 SUPERFAMILY L domain-like 535 897 - -
Apr2g1838 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1838 Apr-Chr2 23982886 23990144 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1838 726 893 WRKY Transcription Factor Family AT4G12020 37.870 5.18e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1838 - - var:108332841 1360.51