Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1813 ATGGTTTCGCCCGAAAACACCAATTGGCTTTTCGATTACACGTTGATCGACGATATTCCCGTTCCCGATGCCTCCTTCACCGTCTCTGCTTCCGCCTTCACCTGGCCCCCGCATCCCTCCAATGTCGGAGTTGAAATTGAAGGCTCACTTGGGGATTCTGATGGTCTCAAAGATCCTGGTTTGAAGAAGAGAGGAAGATCTGATTCATGTACTGCTTCTAGCTCAAAGGCTTGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCGCCTAAAACAGACAAGGCTGCTATTCTGATTGATGCCGTCCGAATGGTGACACAGTTGCGAGGCGAAGCTCAGAAGTTGAAAGACTCAAATATGAGTCTTCAAGAGAAGATTAAAGAGCTAAAGGCTGAGAAAAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGGTAAAATCAATAAATGCCCAACCAGGTTTCTTGGCACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAATTGGTGCCTTTTATTGGTTATCCAGGAGTTTCCATGTGGCAATTTATGCCTCCAGCAGCTGTGGATACCTCACAGGATCATGTACTCCGTCCGCCAGTTGCCTAA 699 0.485 MVSPENTNWLFDYTLIDDIPVPDASFTVSASAFTWPPHPSNVGVEIEGSLGDSDGLKDPGLKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNMSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKSINAQPGFLAPPPAIPAAFAPQGQAPGNKLVPFIGYPGVSMWQFMPPAAVDTSQDHVLRPPVA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1813 232 Gene3D arf6 gtpase in complex with a specific effector, jip4 121 174 - -
Apr2g1813 232 SMART finulus 77 128 IPR011598 GO:0046983
Apr2g1813 232 MobiDBLite consensus disorder prediction 44 75 - -
Apr2g1813 232 CDD bHLH_AtILR3_like 76 151 - -
Apr2g1813 232 Gene3D - 64 120 IPR036638 GO:0046983
Apr2g1813 232 Coils Coil 119 174 - -
Apr2g1813 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983
Apr2g1813 232 PANTHER BHLH TRANSCRIPTION FACTOR 1 232 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Apr2g1813 232 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 232 - -
Apr2g1813 232 CDD bZIP 137 169 - -
Apr2g1813 232 Pfam Helix-loop-helix DNA-binding domain 75 122 IPR011598 GO:0046983
Apr2g1813 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 142 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1813 Apr-Chr2 23749865 23752155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1813 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.293 1.27e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g1813 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1813 - - ccaj:109815088 396.741