Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr2g1813 | ATGGTTTCGCCCGAAAACACCAATTGGCTTTTCGATTACACGTTGATCGACGATATTCCCGTTCCCGATGCCTCCTTCACCGTCTCTGCTTCCGCCTTCACCTGGCCCCCGCATCCCTCCAATGTCGGAGTTGAAATTGAAGGCTCACTTGGGGATTCTGATGGTCTCAAAGATCCTGGTTTGAAGAAGAGAGGAAGATCTGATTCATGTACTGCTTCTAGCTCAAAGGCTTGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCGCCTAAAACAGACAAGGCTGCTATTCTGATTGATGCCGTCCGAATGGTGACACAGTTGCGAGGCGAAGCTCAGAAGTTGAAAGACTCAAATATGAGTCTTCAAGAGAAGATTAAAGAGCTAAAGGCTGAGAAAAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGGTAAAATCAATAAATGCCCAACCAGGTTTCTTGGCACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAATTGGTGCCTTTTATTGGTTATCCAGGAGTTTCCATGTGGCAATTTATGCCTCCAGCAGCTGTGGATACCTCACAGGATCATGTACTCCGTCCGCCAGTTGCCTAA | 699 | 0.485 | MVSPENTNWLFDYTLIDDIPVPDASFTVSASAFTWPPHPSNVGVEIEGSLGDSDGLKDPGLKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNMSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKSINAQPGFLAPPPAIPAAFAPQGQAPGNKLVPFIGYPGVSMWQFMPPAAVDTSQDHVLRPPVA* | 233 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr2g1813 | 232 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 121 | 174 | - | - | |
Apr2g1813 | 232 | SMART | finulus | 77 | 128 | IPR011598 | GO:0046983 | |
Apr2g1813 | 232 | MobiDBLite | consensus disorder prediction | 44 | 75 | - | - | |
Apr2g1813 | 232 | CDD | bHLH_AtILR3_like | 76 | 151 | - | - | |
Apr2g1813 | 232 | Gene3D | - | 64 | 120 | IPR036638 | GO:0046983 | |
Apr2g1813 | 232 | Coils | Coil | 119 | 174 | - | - | |
Apr2g1813 | 232 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 71 | 122 | IPR011598 | GO:0046983 | |
Apr2g1813 | 232 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 232 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Apr2g1813 | 232 | PANTHER | BHLH DOMAIN CLASS TRANSCRIPTION FACTOR | 1 | 232 | - | - | |
Apr2g1813 | 232 | CDD | bZIP | 137 | 169 | - | - | |
Apr2g1813 | 232 | Pfam | Helix-loop-helix DNA-binding domain | 75 | 122 | IPR011598 | GO:0046983 | |
Apr2g1813 | 232 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 73 | 142 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr2g1813 | Apr-Chr2 | 23749865 | 23752155 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr2g1813 | 1 | 232 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G54680 | 70.293 | 1.27e-114 | 325 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Apr2g1813 | HLH | 4.5e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr2g1813 | - | - | ccaj:109815088 | 396.741 |