Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1796 ATGGTAGCCCAACAACCTCAACCTCAGCCTCAACCCTCTTCCCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTTCTTGCTTCTCCCTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGACACAGCGAGTACGCACGTGTTAATCCTAGGGATTGTTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGGTTATTAGGAACACAGACAGCAACGGCTGGTGGACCATCTGTACCCCCACCACAGATTCCAACTACGACTGCAACGCATGCTCCGTATAATTCTGGTAAACCTGTTCCCTGCATTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGGTGTGCCTTCTTGCATGGACCGAATCCTAACACTGGTAATAAAGCAGCTGCTCAGGTCCCAATGACTAGCCAAGGAGCTGAGAATCCTAGTTTTAAGAGGCCTTTTGGTGTAATTGAAAAATATGCTCAGGAAAGGAAAAGTTCCCAGGGAAATTTTGCAAGGTCAGTTGGGGGCCATGATGTTAAACCTGCCCAACAAGTTGAAACTGCTCCACAAAGAAATATGCTTGAATTGGAGAAGCAAGGGCCACCACCATCAGCAGGATTTGATAATGAGGCTTCCAGATTCAAGATAGCTAGTACTCCACCTCTGACCAATGGGCCTTCTGCTGTGGCCCAGTCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCATAGTTTCCACAGTGGTAAGGACGGTGATGAGTTTCTCCGAGAATCCTCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGAAATTCTGATTACTACCATGAGGATGAATTTGGTAAAGCAAGAGCTCAAGATGAAAGGACCTTAGACTCTTTGGATGAATATGATTTAGGACATTCTGCTAATTATAGTTTAGCGGCTGATATTGATCAAGAAAGGTTTCGTGTGCCCCAAGGTTATGAGTCATATGATCACATGCAGGAGCCATATGTTTGGGAGCAGCAGCAGCATAGAAAGGCTTCAGCCCATTTAGAAAGAAGGACTCACCATAGATCTGGCAGTCCTGAAAATGCTGAGGTCTCGGATCTTCGACATCATTTATCCAAGCGCAGGAAGGTCAATGGTTTGAAATCTGTTGTCACTCATGATTATGACCCTGAGAGCCACAGTGAGGAACAAGGTCACCGGTTCTTCTCTCGAAAGGATTCGCACCAGTTACCTTTGAATGAGAGCTCCCTCAGTAATCGCTTCCGAGGCAGGATAAAACTTCCAGCAAATGGTGGTAGTGATCACACAGACAGGGAAGACAGGGGAAGAATCCGGAGCAGATTGTCATCTGGAAGGTCGCAGGCCCCTCCCCAGGGAAGGGTCCAAGACAGAATAAAAGGAAGGTTGCAAGATGATGAGAGGAAAAGCTTCAGGGACCGATCAATGGGGAGAGAATTGATGGGTGATAGAAGTGATTTTGCTGGGCCAAAAAGTCTTGCTGAACTTAAAAATGGGAGGAACACCGAGAATAAGGAGCAACATTTGCTGGGAAAGAGAAAAAGTTTGAGGGATTACCCCCAATCTGAAGATGATCTTCAGTTTGAAGGTCCAAAACCTCTAAGTGAAATTCTGAAGGAGAAGAGAGGAGTTGGAGCTGGTGCGGCCTCTCAGAATGGCAAATCATCTTACAATAAGAATGAAGAAGCTACTGAAAACAAAGATCATACACTTGTCTCAAACCCACAAAATGGAGGGTTGTCTGAGACTAGGGGAGAGATCAAGAGCCATCTGCTAGTTAATGAAAAAGAACCCAAGTTTCAGGCAACTGATGCAGTTGGAAGAGACATTGATAATGCTGATGCAACTCATGGCCAATCATCTGAGGATGGAATGATCTATGATGAAGCGGCGGAGGATCAGGAGTATGAAGGTGATGATCAGAGAGATGGGGACTATGATTATGAGCAAGGTGATGAAGGAGACTATGACTATGAACAAGTTGAGGAGGGTGAAAATCAAGAGCAAGAGTACATGGATGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATTCTTACATAA 2118 0.4518 MVAQQPQPQPQPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTQTATAGGPSVPPPQIPTTTATHAPYNSGKPVPCIFFQKGLCLKGDRCAFLHGPNPNTGNKAAAQVPMTSQGAENPSFKRPFGVIEKYAQERKSSQGNFARSVGGHDVKPAQQVETAPQRNMLELEKQGPPPSAGFDNEASRFKIASTPPLTNGPSAVAQSNRLHQARVPDDHSFHSGKDGDEFLRESSPGFDVLVADELRNSDYYHEDEFGKARAQDERTLDSLDEYDLGHSANYSLAADIDQERFRVPQGYESYDHMQEPYVWEQQQHRKASAHLERRTHHRSGSPENAEVSDLRHHLSKRRKVNGLKSVVTHDYDPESHSEEQGHRFFSRKDSHQLPLNESSLSNRFRGRIKLPANGGSDHTDREDRGRIRSRLSSGRSQAPPQGRVQDRIKGRLQDDERKSFRDRSMGRELMGDRSDFAGPKSLAELKNGRNTENKEQHLLGKRKSLRDYPQSEDDLQFEGPKPLSEILKEKRGVGAGAASQNGKSSYNKNEEATENKDHTLVSNPQNGGLSETRGEIKSHLLVNEKEPKFQATDAVGRDIDNADATHGQSSEDGMIYDEAAEDQEYEGDDQRDGDYDYEQGDEGDYDYEQVEEGENQEQEYMDDEDGDDFAKKIGVILT* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1796 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 111 135 IPR000571 GO:0046872
Apr2g1796 705 MobiDBLite consensus disorder prediction 441 457 - -
Apr2g1796 705 MobiDBLite consensus disorder prediction 604 620 - -
Apr2g1796 705 SUPERFAMILY CCCH zinc finger 112 134 IPR036855 GO:0046872
Apr2g1796 705 MobiDBLite consensus disorder prediction 642 691 - -
Apr2g1796 705 ProSiteProfiles Zinc finger C3H1-type profile. 50 76 IPR000571 GO:0046872
Apr2g1796 705 MobiDBLite consensus disorder prediction 585 599 - -
Apr2g1796 705 MobiDBLite consensus disorder prediction 474 501 - -
Apr2g1796 705 MobiDBLite consensus disorder prediction 514 541 - -
Apr2g1796 705 SMART c3hfinal6 20 47 IPR000571 GO:0046872
Apr2g1796 705 SMART c3hfinal6 52 75 IPR000571 GO:0046872
Apr2g1796 705 SMART c3hfinal6 109 135 IPR000571 GO:0046872
Apr2g1796 705 MobiDBLite consensus disorder prediction 390 417 - -
Apr2g1796 705 Gene3D - 100 174 - -
Apr2g1796 705 Gene3D - 9 76 - -
Apr2g1796 705 MobiDBLite consensus disorder prediction 174 200 - -
Apr2g1796 705 ProSiteProfiles Zinc finger C3H1-type profile. 109 136 IPR000571 GO:0046872
Apr2g1796 705 Pfam Zinc-finger containing family 20 74 IPR041686 -
Apr2g1796 705 MobiDBLite consensus disorder prediction 361 380 - -
Apr2g1796 705 MobiDBLite consensus disorder prediction 247 267 - -
Apr2g1796 705 ProSiteProfiles Zinc finger C3H1-type profile. 19 48 IPR000571 GO:0046872
Apr2g1796 705 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 3 703 - -
Apr2g1796 705 MobiDBLite consensus disorder prediction 348 694 - -
Apr2g1796 705 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 3 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1796 Apr-Chr2 23602774 23606547 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr2g1796 zf-CCCH_3 6.7e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1796 - - gmx:102669253 973.77