Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1725 ATGACGGAAGAAAGGCAACGGAGCATGGCGGTTCTGCCATGGATGCGAGACCCCATTGACGTGACTCTCTGTGAAGAACTCCCTCTCCATTCCGTCCCTCTTCTCCACCCGACGTTGCAGCTCGCACTACAGAACATGGGAATCTCCAAGCTCTTCCCCGTTCAGGTCGCCGTTTGGCAAGAGACCGTTGGACCGGGCAACTTCCGCCGTGACATTTGCGTCAACTCACCCACCGGAAGCGGCAAAACCTTGGCCTACGCGCTCCCTATCGTGCAAATGCTATCCACGCGCGTAGTTAAGTGCCTCCGTGCCTTGGTTGTGGTTCCCACCCGCGACCTCGCTTTGCAGGTTAAACAAGTCTTCGACGCCGTTGCGTCTCCGTTAGGCTTGCACGTTGGTTTGGCCGTTGGTCAATCTTCCGTCGCCGACGAGATTTCTAGCCTCGTCTACGTGCCTGGACACGATCCTGGCACGTGCTTTGATCCGCCCGATGCTTTGCTTCGGTTCCAAAGCAAGGTGGACATATTGGTGGCAACCCCTGGAAGACTCATGGATCACATCAATAGCACTAAAGGTTTCACACTTGAACATCTTTATTATCTTGTGGTTGATGAAACGGATCGATTGCTCCGGGAGGCTTATCAGTCCTGGCTGCCTACTGTGCTGGAATTGACTCAATTTAGTGATGATGTTTTTCGACCAGCGGATTCTTTGTCCCCTTTCTCTCTTGGTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTAGAGAGGGGGTTCAAGGATAATCCTTACCCTAGGCTGGCAAAGATGGTTCTATCTGCGACATTAACTCAGGACCCAGGCAGGCTTGTTCAGCTTAATTTGCATCACCCTTTATTCCTGAGAGCTGGGAAAATGCGATATCGACTCCCAGAAAATTTAGAATCTTACAAACTGATTTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAAATCTGTGGACTCAACACATCGGCTCTGCAAATTACTAAAATGTTTTGGAGATCTGCAAATTGATATAAAGGAGTATTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACATTGAATGAATTTCGTCAAGGGGATTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGACGTTGAAGGGGTAAGAAATGTTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGGGCAGGTAGAACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACAATGATGGCAGAAGATGAGGTTCGACGATTTAAAAAGTTGATGCAAAAGGCTGAGGCTAGGTCTTGTCTTGAGCACTCTGTTCCATCCAGTTTGATTGAAGAACTTCATACTACCTACCAATCAGCACTGGCAAAATTTAAGGAGATAATTTTGGAGACACGAAAGAAACCTAAGGATTAG 1491 0.4702 MTEERQRSMAVLPWMRDPIDVTLCEELPLHSVPLLHPTLQLALQNMGISKLFPVQVAVWQETVGPGNFRRDICVNSPTGSGKTLAYALPIVQMLSTRVVKCLRALVVVPTRDLALQVKQVFDAVASPLGLHVGLAVGQSSVADEISSLVYVPGHDPGTCFDPPDALLRFQSKVDILVATPGRLMDHINSTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTQFSDDVFRPADSLSPFSLGGALRTRRRCGVERGFKDNPYPRLAKMVLSATLTQDPGRLVQLNLHHPLFLRAGKMRYRLPENLESYKLICERKVKPLYLVALLKSLGEEKCIVFTKSVDSTHRLCKLLKCFGDLQIDIKEYSGLQHQRVRSKTLNEFRQGDFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTMMAEDEVRRFKKLMQKAEARSCLEHSVPSSLIEELHTTYQSALAKFKEIILETRKKPKD* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1725 496 Pfam DEAD/DEAH box helicase 53 280 IPR011545 GO:0003676|GO:0005524
Apr2g1725 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 452 IPR027417 -
Apr2g1725 496 CDD DEADc_DDX51 39 294 - -
Apr2g1725 496 Gene3D - 306 496 IPR027417 -
Apr2g1725 496 Gene3D - 24 305 IPR027417 -
Apr2g1725 496 SMART helicmild6 346 430 IPR001650 -
Apr2g1725 496 PANTHER RNA HELICASE 33 475 - -
Apr2g1725 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 472 IPR001650 -
Apr2g1725 496 Coils Coil 437 457 - -
Apr2g1725 496 CDD SF2_C_DEAD 307 438 - -
Apr2g1725 496 Pfam Helicase conserved C-terminal domain 319 430 IPR001650 -
Apr2g1725 496 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 33 475 - -
Apr2g1725 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 294 IPR014001 -
Apr2g1725 496 SMART ultradead3 47 310 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1725 Apr-Chr2 22854370 22860107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1725 57 452 Eukaryotic Initiation Factors Gene Family AT3G19760 23.515 4.37e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1725 K14807 - jre:109011065 696.427