Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1724 ATGGACCTCATAGTACGAGAAATATCAATCATGCGAATGATTAGACACCCCAACGTCGTTCGTTTATACGAAGTGATGGCTAGCAGGAAATATATATATATGGTAATGGAACGTGTCGATGGTGGTGAACTCTACGATAAATTTGAAGTAAATGGCCATGGTCTCCGTGAAGACGAAGCAAGAAAATTTTTTCACCAGCTTATATGTGCAGTCGATTTCTGTCACAGTAGAGGTGTTTTCCATAGAGACTTGAAGCCGGAGAATCTGTTGATTGCAGCTGATGGCTCACTTAAAGTATCAGATTTTGGATTAAGTGCACTGCCTCAACAGCTTCGAGAAGATGGGCGGCTTCACACAATGTGCGGTTCAACACGTTTTATGGCCCCCGAGGTGATGAAAAAAGAAGGCTATGAGGGTGCAAAGGCTGATATCTGGTCATGTGGTATTGTTCTTTTTACCTTATTGGCTGGTCAAGTGCCCTTCGAAGACAACAACAGCTTCCTTTTATGTCAAAAGATTTTCCAGGCTAAGCTCACTTTTCCATCATATATTTCTTCAAGTGTAAAGAGACTACTGAAGAGAATCATCGATCCCAACCCTGATACACGTATTACAATTCAGGAGATCTATGACCATGAGTGGTTCAAGAAAGACTATCAACCTCCTAGATTTTCGCTGGAAAATATTGCTCTTGATGAACCAAGTACTAGTTTGGGTACATCAATTAATCCACAAAATCTTGTGGAGAGGCGACAAGAGAGGCCTACAGCAGCTGTCCCTATGAATGCGTTTGAGATTTTGTCTACCCCTCTGGGCTTCAACCTTTTTGGAAATTTTTTCAGCCGAGTACTTGTTAAAAGGGAAACAAAATCCATATATAGGTGTTCCACAAATCAGATAGTTCCAAGAATTGAGCAGGCCGCAGCATCTATGGGTTTTCATGTTAGGATGAGCAACAACAAGTTGAGGATAAGAGGGGAAAGGGCTGGTCGTAAAGGTCATCTGACAATAGCCAGTGAGATATTTGAGGTGGCCTCTCCATTTCACATGGTGGAGTTTCGGAAGGCTGGAGGAGATACTCCGGAATTTCACACGTTCTACAAGGATCTATCTACTGGGCTGAGTGATATCCTTTGGAAAGCAGAGCCTGTCGATGTAGAAAGAGATGGTGCCAGTACATCAAATGCAGGTGCCGGTACATCAACTGCAACATAG 1215 0.428 MDLIVREISIMRMIRHPNVVRLYEVMASRKYIYMVMERVDGGELYDKFEVNGHGLREDEARKFFHQLICAVDFCHSRGVFHRDLKPENLLIAADGSLKVSDFGLSALPQQLREDGRLHTMCGSTRFMAPEVMKKEGYEGAKADIWSCGIVLFTLLAGQVPFEDNNSFLLCQKIFQAKLTFPSYISSSVKRLLKRIIDPNPDTRITIQEIYDHEWFKKDYQPPRFSLENIALDEPSTSLGTSINPQNLVERRQERPTAAVPMNAFEILSTPLGFNLFGNFFSRVLVKRETKSIYRCSTNQIVPRIEQAAASMGFHVRMSNNKLRIRGERAGRKGHLTIASEIFEVASPFHMVEFRKAGGDTPEFHTFYKDLSTGLSDILWKAEPVDVERDGASTSNAGAGTSTAT* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1724 404 SMART serkin_6 2 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1724 404 Gene3D Kinase associated domain 1, KA1 261 380 - -
Apr2g1724 404 Gene3D Transferase(Phosphotransferase) domain 1 1 260 - -
Apr2g1724 404 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 4 382 - -
Apr2g1724 404 Pfam Protein kinase domain 4 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1724 404 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1724 404 PANTHER - 4 382 - -
Apr2g1724 404 Pfam NAF domain 261 316 IPR004041 GO:0007165
Apr2g1724 404 SUPERFAMILY Protein kinase-like (PK-like) 3 263 IPR011009 -
Apr2g1724 404 CDD CIPK_C 262 376 - -
Apr2g1724 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 79 91 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1724 Apr-Chr2 22850591 22853401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1724 26 403 CBL-interacting serine-threonine protein kinases AT1G30270 55.325 9.22e-154 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr2g1724 Pkinase 4.7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1724 - - aprc:113855848 785.793